MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA Brain:127.5 nTPM
GTEx:19.6 nTPM
FANTOM5:107.4 Scaled Tags Per Million
Pig:119.5 nTPM
Mouse:150.7 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.8
2586 Male, age 75, left hemisphere 153.8
1827 Male, age 72, unknown 122.6
2666 Male, age 74, left hemisphere 117.0
2828 Female, age 72, unknown 107.8
1870 Female, age 42, unknown 105.1
2411 Female, age 72, unknown 90.9
1833 Male, age 53, unknown 89.9
2019 Male, age 18, unknown 85.0
2219 Male, age 76, both hemispheres 83.8
1830 Male, age 51, unknown 82.5
Dorsal raphe nucleus
nTPM: 96.9
2298 Female, age 72, unknown 111.1
2047 Male, age 72, unknown 103.6
2016 Female, age 72, unknown 93.6
2750 Male, age 76, both hemispheres 89.2
1828 Male, age 53, unknown 86.9
Inferior colliculus
nTPM: 95.3
2849 Male, age 72, unknown 101.0
2097 Female, age 72, unknown 99.7
1848 Female, age 42, unknown 97.7
1890 Male, age 53, unknown 82.9
Median raphe nucleus
nTPM: 93.4
2220 Male, age 76, midline 93.4
Periaquaductal grey, anterior
nTPM: 127.5
1795 Male, age 51, unknown 137.1
1947 Male, age 18, unknown 132.2
2502 Female, age 75, unknown 113.2
Periaquaductal grey, dorsal
nTPM: 104.6
1840 Male, age 53, unknown 125.4
1831 Male, age 72, unknown 102.4
2850 Male, age 76, both hemispheres 98.9
2464 Female, age 72, unknown 91.6
Periaquaductal grey, lateral
nTPM: 107.5
2053 Male, age 18, unknown 132.6
2140 Male, age 76, both hemispheres 97.2
2272 Male, age 74, both hemispheres 92.8
Pretectal area
nTPM: 116.8
1816 Male, age 51, unknown 159.9
1944 Female, age 72, unknown 134.3
1817 Female, age 42, unknown 123.1
1815 Male, age 53, unknown 121.9
2407 Male, age 75, both hemispheres 121.3
2224 Female, age 72, unknown 115.9
2007 Male, age 72, unknown 113.6
2825 Male, age 18, unknown 108.9
2667 Female, age 75, unknown 105.1
2273 Male, age 74, both hemispheres 104.8
2316 Male, age 76, right hemisphere 75.8
Red nucleus
nTPM: 80.8
2584 Male, age 75, left hemisphere 109.2
2725 Female, age 75, unknown 97.1
2588 Male, age 74, left hemisphere 88.8
2503 Female, age 72, unknown 80.3
1865 Male, age 51, unknown 80.0
1821 Female, age 72, unknown 78.6
2785 Male, age 18, unknown 75.6
2227 Male, age 72, unknown 75.3
2769 Male, age 72, unknown 74.6
1954 Female, age 42, unknown 73.3
1904 Male, age 53, unknown 71.8
2823 Male, age 76, right hemisphere 65.0
Substantia nigra
nTPM: 102.5
2583 Male, age 75, right hemisphere 118.5
1889 Female, age 72, unknown 114.6
1941 Male, age 53, unknown 112.4
1851 Male, age 51, unknown 103.7
2241 Male, age 72, unknown 100.4
2665 Male, age 74, both hemispheres 100.1
1916 Female, age 42, unknown 98.9
2590 Female, age 75, unknown 96.4
2409 Female, age 72, unknown 93.0
2699 Male, age 18, unknown 87.6
Superior colliculus
nTPM: 113.0
2664 Male, age 75, both hemispheres 146.0
2261 Male, age 18, unknown 133.8
1796 Male, age 53, unknown 127.0
2668 Female, age 75, unknown 119.8
2087 Female, age 72, unknown 119.3
1913 Female, age 42, unknown 106.9
1839 Male, age 51, unknown 98.0
2587 Male, age 74, left hemisphere 97.7
1995 Male, age 72, unknown 96.7
1895 Male, age 76, right hemisphere 84.5
Ventral tegmental area
nTPM: 101.3
2223 Female, age 72, unknown 127.7
2021 Male, age 53, unknown 100.9
2410 Female, age 72, unknown 98.5
1915 Female, age 42, unknown 94.4
2218 Male, age 76, both hemispheres 93.5
1942 Male, age 51, unknown 92.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 32.8
Min nTPM: 12.9
Std nTPM: 3.2
Median nTPM: 19.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 27.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 26.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 25.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 25.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 24.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 24.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 107.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.4
FF:10158-103A5 76 years, female 107.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.9
Samples: 4

Max nTPM: 119.5
Min nTPM: 77.1
Sample A Female 119.5
Sample B Female 94.4
Sample C Male 104.6
Sample D Male 77.1
Midbrain
nTPM: 119.6
Samples: 4

Max nTPM: 155.7
Min nTPM: 93.6
Sample A Female 113.0
Sample B Female 93.6
Sample C Male 155.7
Sample D Male 115.9
Periaqueductal gray
nTPM: 93.3
Samples: 3

Max nTPM: 111.6
Min nTPM: 82.3
Sample B Female 82.3
Sample C Male 111.6
Sample D Male 86.1
Superior colliculi
nTPM: 106.8
Samples: 4

Max nTPM: 117.9
Min nTPM: 95.0
Sample A Female 114.0
Sample B Female 95.0
Sample C Male 117.9
Sample D Male 100.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 150.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.7
Samples: 4

Max nTPM: 161.3
Min nTPM: 137.6
Sample A Male 137.6
Sample B Male 149.0
Sample C Female 155.0
Sample D Female 161.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
68744976 Antisense, RP_050210_01_A07, Mouse strain C57BL/6J (56 days, male) 12.4

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