MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:651.3 nTPM
HPA Brain:376.5 nTPM
GTEx:651.3 nTPM
FANTOM5:277.5 Scaled Tags Per Million
Pig:773.0 nTPM
Mouse:27.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 376.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 255.3
2019 Male, age 18, unknown 389.8
2828 Female, age 72, unknown 307.0
2411 Female, age 72, unknown 303.0
1827 Male, age 72, unknown 281.3
1870 Female, age 42, unknown 257.8
2666 Male, age 74, left hemisphere 239.1
1830 Male, age 51, unknown 234.7
2219 Male, age 76, both hemispheres 190.2
1833 Male, age 53, unknown 186.2
2586 Male, age 75, left hemisphere 164.0
Dorsal raphe nucleus
nTPM: 325.3
2750 Male, age 76, both hemispheres 444.9
1828 Male, age 53, unknown 356.7
2298 Female, age 72, unknown 320.4
2047 Male, age 72, unknown 316.1
2016 Female, age 72, unknown 188.5
Inferior colliculus
nTPM: 132.5
1848 Female, age 42, unknown 160.8
2097 Female, age 72, unknown 151.5
1890 Male, age 53, unknown 128.1
2849 Male, age 72, unknown 89.6
Median raphe nucleus
nTPM: 376.5
2220 Male, age 76, midline 376.5
Periaquaductal grey, anterior
nTPM: 350.0
1795 Male, age 51, unknown 422.7
1947 Male, age 18, unknown 375.0
2502 Female, age 75, unknown 252.3
Periaquaductal grey, dorsal
nTPM: 149.8
1831 Male, age 72, unknown 173.8
2850 Male, age 76, both hemispheres 171.3
2464 Female, age 72, unknown 153.7
1840 Male, age 53, unknown 100.3
Periaquaductal grey, lateral
nTPM: 211.7
2272 Male, age 74, both hemispheres 271.0
2053 Male, age 18, unknown 186.0
2140 Male, age 76, both hemispheres 178.2
Pretectal area
nTPM: 297.0
2007 Male, age 72, unknown 497.4
1817 Female, age 42, unknown 396.7
1816 Male, age 51, unknown 358.3
2273 Male, age 74, both hemispheres 335.6
1944 Female, age 72, unknown 334.3
1815 Male, age 53, unknown 289.7
2224 Female, age 72, unknown 253.2
2667 Female, age 75, unknown 242.9
2825 Male, age 18, unknown 203.8
2407 Male, age 75, both hemispheres 185.1
2316 Male, age 76, right hemisphere 170.3
Red nucleus
nTPM: 294.5
2785 Male, age 18, unknown 360.9
2823 Male, age 76, right hemisphere 328.0
1821 Female, age 72, unknown 322.6
1865 Male, age 51, unknown 317.3
2725 Female, age 75, unknown 298.2
2503 Female, age 72, unknown 295.9
2769 Male, age 72, unknown 287.4
1954 Female, age 42, unknown 284.4
2227 Male, age 72, unknown 276.7
2588 Male, age 74, left hemisphere 271.7
1904 Male, age 53, unknown 258.2
2584 Male, age 75, left hemisphere 233.4
Substantia nigra
nTPM: 268.7
1941 Male, age 53, unknown 475.5
1889 Female, age 72, unknown 345.8
1851 Male, age 51, unknown 327.4
1916 Female, age 42, unknown 291.9
2590 Female, age 75, unknown 284.6
2409 Female, age 72, unknown 206.2
2583 Male, age 75, right hemisphere 205.4
2665 Male, age 74, both hemispheres 203.1
2241 Male, age 72, unknown 197.6
2699 Male, age 18, unknown 149.6
Superior colliculus
nTPM: 237.8
2668 Female, age 75, unknown 319.7
2587 Male, age 74, left hemisphere 303.0
2261 Male, age 18, unknown 285.4
2087 Female, age 72, unknown 268.8
1796 Male, age 53, unknown 257.1
1913 Female, age 42, unknown 238.4
1995 Male, age 72, unknown 192.5
2664 Male, age 75, both hemispheres 189.8
1839 Male, age 51, unknown 161.5
1895 Male, age 76, right hemisphere 161.4
Ventral tegmental area
nTPM: 294.2
2223 Female, age 72, unknown 413.7
2410 Female, age 72, unknown 327.6
2218 Male, age 76, both hemispheres 314.1
2021 Male, age 53, unknown 261.5
1915 Female, age 42, unknown 251.0
1942 Male, age 51, unknown 197.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 651.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 651.3
Samples: 139

Max nTPM: 1384.9
Min nTPM: 191.4
Std nTPM: 217.8
Median nTPM: 628.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1384.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1332.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1296.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1206.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1185.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1156.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1154.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1106.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1090.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1071.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1064.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 277.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 277.5
FF:10158-103A5 76 years, female 277.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 773.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 773.0
Samples: 4

Max nTPM: 1163.7
Min nTPM: 302.5
Sample A Female 1163.7
Sample B Female 914.7
Sample C Male 711.2
Sample D Male 302.5
Midbrain
nTPM: 506.9
Samples: 4

Max nTPM: 1094.9
Min nTPM: 164.6
Sample A Female 1094.9
Sample B Female 460.8
Sample C Male 307.3
Sample D Male 164.6
Periaqueductal gray
nTPM: 339.6
Samples: 3

Max nTPM: 396.3
Min nTPM: 257.4
Sample B Female 257.4
Sample C Male 396.3
Sample D Male 365.0
Superior colliculi
nTPM: 393.2
Samples: 4

Max nTPM: 565.0
Min nTPM: 298.8
Sample A Female 320.0
Sample B Female 565.0
Sample C Male 388.9
Sample D Male 298.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 32.4
Min nTPM: 24.0
Sample A Male 32.4
Sample B Male 26.6
Sample C Female 24.0
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.4
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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