HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:305.5 nTPM
HPA Brain:167.3 nTPM
GTEx:305.5 nTPM
FANTOM5:123.3 Scaled Tags Per Million
Pig:156.5 nTPM
Mouse:42.8 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000646Antibody CAB002157
Glial cells LowLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 167.3
Sample id Sample description nTPM
Hippocampus
nTPM: 167.3
2529 Female, age 94, left hemisphere 240.3
1898 Male, age 80, left hemisphere 166.4
1855 Male, age 76, left hemisphere 159.6
2148 Female, age 91, left hemisphere 153.1
2621 Female, age 67, right hemisphere 151.7
1911 Female, age 85, right hemisphere 132.6
Dentate gyrus
nTPM: 154.7
2010 Male, age 76, both hemispheres 198.1
2528 Male, age 74, both hemispheres 198.0
2530 Female, age 94, left hemisphere 175.1
2246 Female, age 85, both hemispheres 134.8
2531 Female, age 67, both hemispheres 121.5
1927 Female, age 91, both hemispheres 100.5
Entorhinal gyrus
nTPM: 161.3
2117 Female, age 91, right hemisphere 211.8
1938 Female, age 85, left hemisphere 181.8
2764 Male, age 80, right hemisphere 163.4
1787 Male, age 76, left hemisphere 157.4
2686 Male, age 75, right hemisphere 157.4
2613 Female, age 94, left hemisphere 96.1
Hippocampus, CA1
nTPM: 135.6
2527 Male, age 74, both hemispheres 202.8
2082 Female, age 91, right hemisphere 137.0
2045 Male, age 76, both hemispheres 131.0
1873 Female, age 85, both hemispheres 110.8
2749 Male, age 80, left hemisphere 96.3
Hippocampus, CA2
nTPM: 153.7
2249 Male, age 74, both hemispheres 233.0
2437 Female, age 94, left hemisphere 169.2
1940 Female, age 85, left hemisphere 155.3
2113 Female, age 91, right hemisphere 147.4
1963 Male, age 80, left hemisphere 118.5
1892 Male, age 76, both hemispheres 98.7
Hippocampus, CA3
nTPM: 143.8
2436 Male, age 74, both hemispheres 204.9
1867 Male, age 76, both hemispheres 152.9
2620 Female, age 94, left hemisphere 138.7
1891 Female, age 85, both hemispheres 128.2
2861 Female, age 67, both hemispheres 121.3
2137 Male, age 80, left hemisphere 116.5
Parahippocampal cortex
nTPM: 157.8
1933 Female, age 85, both hemispheres 196.9
2018 Male, age 76, both hemispheres 184.9
2532 Female, age 72, left hemisphere 181.8
2245 Female, age 91, both hemispheres 167.3
1990 Female, age 91, right hemisphere 165.5
1850 Male, age 80, both hemispheres 153.9
2250 Female, age 67, right hemisphere 145.3
2692 Male, age 74, both hemispheres 137.0
2622 Female, age 67, right hemisphere 134.6
2693 Female, age 94, both hemispheres 110.9
Perirhinal gyrus
nTPM: 154.5
1847 Female, age 91, left hemisphere 183.1
1794 Male, age 80, right hemisphere 176.4
2521 Female, age 94, right hemisphere 154.6
1841 Female, age 85, right hemisphere 153.0
2848 Male, age 76, right hemisphere 105.2
Subiculum
nTPM: 158.1
2042 Male, age 76, both hemispheres 185.4
2619 Male, age 74, both hemispheres 172.2
2729 Female, age 91, right hemisphere 171.2
2438 Female, age 94, left hemisphere 153.5
1977 Female, age 85, both hemispheres 144.6
1901 Male, age 80, both hemispheres 122.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 305.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 305.5
Samples: 197

Max nTPM: 802.0
Min nTPM: 126.5
Std nTPM: 112.1
Median nTPM: 287.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 802.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 721.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 674.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 668.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 659.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 651.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 596.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 573.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 559.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 546.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 543.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 123.3
FF:10153-102I9 76 years, female 133.4
FF:10169-103B7 60 years, female 113.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 156.5
Pig sample Sample description nTPM
Subiculum
nTPM: 124.9
Samples: 4

Max nTPM: 162.6
Min nTPM: 99.2
Sample A Female 99.2
Sample B Female 110.0
Sample C Male 127.6
Sample D Male 162.6
Dorsal hippocampus
nTPM: 94.2
Samples: 4

Max nTPM: 113.7
Min nTPM: 65.4
Sample A Female 113.7
Sample B Female 111.1
Sample C Male 86.6
Sample D Male 65.4
Entorhinal cortex
nTPM: 90.3
Samples: 4

Max nTPM: 102.7
Min nTPM: 74.3
Sample A Female 96.9
Sample B Female 102.7
Sample C Male 87.1
Sample D Male 74.3
Ventral hippocampus
nTPM: 156.5
Samples: 4

Max nTPM: 204.3
Min nTPM: 82.5
Sample A Female 174.8
Sample B Female 164.3
Sample C Male 204.3
Sample D Male 82.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.3
Samples: 4

Max nTPM: 41.3
Min nTPM: 35.1
Sample A Male 35.1
Sample B Male 35.5
Sample C Female 41.3
Sample D Female 41.2
Hippocampal formation
nTPM: 42.8
Samples: 4

Max nTPM: 46.8
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 42.8
Sample C Female 45.7
Sample D Female 46.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 0.8
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.7
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.4

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