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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
500.6
nTPM
Monaco:
1461.1
nTPM
Schmiedel:
1057.0
TPM
T-CELLS - Annotated protein expression
Pending normal tissue analysis
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
500.6
HPA sample
nTPM
gdT-cell nTPM: 79.9
Samples: 6
Max nTPM: 109.9
Min nTPM: 52.4
P10809_1007
53.2
P10809_1022
109.9
P10809_1041
91.2
P10809_1060
97.7
P10809_1077
52.4
P10809_1098
75.1
MAIT T-cell nTPM: 95.7
Samples: 6
Max nTPM: 147.2
Min nTPM: 55.8
P10809_1006
91.4
P10809_1024
147.2
P10809_1043
78.0
P10809_1062
115.1
P10809_1083
55.8
P10809_1097
86.6
Memory CD4 T-cell nTPM: 207.7
Samples: 6
Max nTPM: 301.2
Min nTPM: 138.6
P10809_1014
201.0
P10809_1026
301.2
P10809_1045
208.7
P10809_1064
167.3
P10809_1086
138.6
P10809_1113
229.5
Memory CD8 T-cell nTPM: 113.7
Samples: 5
Max nTPM: 147.5
Min nTPM: 78.5
P10809_1012
147.5
P10809_1027
106.5
P10809_1046
122.0
P10809_1065
78.5
P10809_1111
114.0
Naive CD4 T-cell nTPM: 500.7
Samples: 6
Max nTPM: 624.2
Min nTPM: 353.5
P10809_1015
353.5
P10809_1030
546.4
P10809_1049
624.2
P10809_1068
603.6
P10809_1085
387.1
P10809_1112
489.1
Naive CD8 T-cell nTPM: 319.3
Samples: 6
Max nTPM: 423.6
Min nTPM: 80.2
P10809_1016
356.2
P10809_1031
423.6
P10809_1050
337.5
P10809_1069
302.9
P10809_1087
80.2
P10809_1110
415.1
T-reg nTPM: 257.8
Samples: 6
Max nTPM: 289.3
Min nTPM: 227.5
P10809_1018
232.7
P10809_1037
277.2
P10809_1056
253.8
P10809_1075
289.3
P10809_1094
266.2
P10809_1106
227.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
1461.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 792.3
Samples: 4
Max nTPM: 873.3
Min nTPM: 715.5
RHH5202_R3573
873.3
RHH5230_R3602
771.1
RHH5259_R3631
715.5
RHH5288_R3660
809.3
Effector memory CD8 T-cell nTPM: 370.7
Samples: 4
Max nTPM: 451.3
Min nTPM: 317.4
RHH5203_R3574
329.2
RHH5231_R3603
317.4
RHH5260_R3632
451.3
RHH5289_R3661
384.8
MAIT T-cell nTPM: 436.5
Samples: 4
Max nTPM: 504.0
Min nTPM: 378.6
RHH5233_R3605
444.6
RHH5205_R3576
504.0
RHH5262_R3634
418.8
RHH5297_R3663
378.6
Memory CD4 T-cell TFH nTPM: 994.6
Samples: 4
Max nTPM: 1135.4
Min nTPM: 834.4
RHH5300_R3666
994.7
RHH5236_R3608
1135.4
RHH5265_R3637
834.4
RHH5208_R3579
1014.0
Memory CD4 T-cell Th1 nTPM: 907.8
Samples: 4
Max nTPM: 1092.2
Min nTPM: 712.2
RHH5210_R3581
1092.2
RHH5302_R3668
988.0
RHH5238_R3610
712.2
RHH5267_R3639
838.9
Memory CD4 T-cell Th1/Th17 nTPM: 715.2
Samples: 4
Max nTPM: 843.4
Min nTPM: 633.8
RHH5303_R3669
843.4
RHH5211_R3582
644.2
RHH5239_R3611
739.2
RHH5268_R3640
633.8
Memory CD4 T-cell Th17 nTPM: 754.9
Samples: 4
Max nTPM: 892.6
Min nTPM: 621.6
RHH5304_R3670
829.6
RHH5212_R3583
675.8
RHH5240_R3612
892.6
RHH5269_R3641
621.6
Memory CD4 T-cell Th2 nTPM: 897.3
Samples: 4
Max nTPM: 1006.8
Min nTPM: 789.4
RHH5305_R3671
1006.8
RHH5213_R3584
869.6
RHH5241_R3613
923.4
RHH5270_R3642
789.4
Naive CD4 T-cell nTPM: 1443.3
Samples: 4
Max nTPM: 1577.8
Min nTPM: 1173.2
RHH5306_R3672
1577.8
RHH5214_R3585
1535.3
RHH5242_R3614
1173.2
RHH5271_R3643
1486.8
Naive CD8 T-cell nTPM: 1461.1
Samples: 4
Max nTPM: 1703.2
Min nTPM: 1231.8
RHH5201_R3572
1534.3
RHH5229_R3601
1231.8
RHH5258_R3630
1375.1
RHH5287_R3659
1703.2
Non-Vd2 gdTCR nTPM: 291.9
Samples: 4
Max nTPM: 326.0
Min nTPM: 254.3
RHH5235_R3607
326.0
RHH5264_R3636
321.7
RHH5207_R3578
265.7
RHH5299_R3665
254.3
T-reg nTPM: 1095.5
Samples: 4
Max nTPM: 1196.3
Min nTPM: 999.8
RHH5301_R3667
999.8
RHH5237_R3609
1196.3
RHH5266_R3638
1092.3
RHH5209_R3580
1093.6
Terminal effector memory CD4 T-cell nTPM: 419.0
Samples: 2
Max nTPM: 562.5
Min nTPM: 275.5
RHH5243_R3615
275.5
RHH5272_R3644
562.5
Terminal effector memory CD8 T-cell nTPM: 286.2
Samples: 4
Max nTPM: 347.0
Min nTPM: 194.6
RHH5232_R3604
270.4
RHH5204_R3575
194.6
RHH5261_R3633
347.0
RHH5296_R3662
332.8
Vd2 gdTCR nTPM: 427.8
Samples: 4
Max nTPM: 573.3
Min nTPM: 295.7
RHH5234_R3606
439.8
RHH5206_R3577
295.7
RHH5263_R3635
573.3
RHH5298_R3664
402.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
