MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:26.1 nTPM
GTEx:10.9 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:13.4 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.0
2586 Male, age 75, left hemisphere 30.0
1870 Female, age 42, unknown 27.9
1833 Male, age 53, unknown 26.3
2411 Female, age 72, unknown 26.2
1830 Male, age 51, unknown 26.1
2828 Female, age 72, unknown 26.1
2019 Male, age 18, unknown 22.9
1827 Male, age 72, unknown 22.0
2666 Male, age 74, left hemisphere 21.5
2219 Male, age 76, both hemispheres 20.8
Dorsal raphe nucleus
nTPM: 25.5
2016 Female, age 72, unknown 29.3
2298 Female, age 72, unknown 25.8
2750 Male, age 76, both hemispheres 25.2
2047 Male, age 72, unknown 23.8
1828 Male, age 53, unknown 23.7
Inferior colliculus
nTPM: 23.9
2849 Male, age 72, unknown 25.0
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 23.6
2097 Female, age 72, unknown 23.1
Median raphe nucleus
nTPM: 18.6
2220 Male, age 76, midline 18.6
Periaquaductal grey, anterior
nTPM: 25.3
2502 Female, age 75, unknown 28.8
1947 Male, age 18, unknown 24.7
1795 Male, age 51, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 24.7
1840 Male, age 53, unknown 26.8
2850 Male, age 76, both hemispheres 24.4
2464 Female, age 72, unknown 23.9
1831 Male, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 26.1
2053 Male, age 18, unknown 27.9
2140 Male, age 76, both hemispheres 26.6
2272 Male, age 74, both hemispheres 23.7
Pretectal area
nTPM: 22.9
2316 Male, age 76, right hemisphere 28.0
2273 Male, age 74, both hemispheres 26.3
2825 Male, age 18, unknown 25.9
2667 Female, age 75, unknown 24.2
2407 Male, age 75, both hemispheres 23.7
2224 Female, age 72, unknown 23.3
1815 Male, age 53, unknown 22.3
1817 Female, age 42, unknown 21.4
2007 Male, age 72, unknown 20.1
1944 Female, age 72, unknown 18.6
1816 Male, age 51, unknown 18.2
Red nucleus
nTPM: 25.5
2769 Male, age 72, unknown 29.4
1904 Male, age 53, unknown 28.7
2227 Male, age 72, unknown 28.5
1865 Male, age 51, unknown 27.3
2503 Female, age 72, unknown 26.1
1821 Female, age 72, unknown 25.3
1954 Female, age 42, unknown 24.7
2823 Male, age 76, right hemisphere 24.5
2588 Male, age 74, left hemisphere 24.3
2785 Male, age 18, unknown 23.3
2584 Male, age 75, left hemisphere 23.2
2725 Female, age 75, unknown 20.6
Substantia nigra
nTPM: 22.0
2699 Male, age 18, unknown 25.2
1851 Male, age 51, unknown 23.6
2590 Female, age 75, unknown 23.6
2665 Male, age 74, both hemispheres 23.6
2583 Male, age 75, right hemisphere 23.2
2409 Female, age 72, unknown 22.7
1889 Female, age 72, unknown 21.1
1916 Female, age 42, unknown 20.1
1941 Male, age 53, unknown 19.0
2241 Male, age 72, unknown 18.1
Superior colliculus
nTPM: 25.0
1995 Male, age 72, unknown 30.9
2664 Male, age 75, both hemispheres 29.1
1913 Female, age 42, unknown 27.7
1839 Male, age 51, unknown 25.9
1895 Male, age 76, right hemisphere 24.1
2587 Male, age 74, left hemisphere 23.7
2668 Female, age 75, unknown 23.3
1796 Male, age 53, unknown 23.2
2261 Male, age 18, unknown 21.1
2087 Female, age 72, unknown 20.4
Ventral tegmental area
nTPM: 23.5
1942 Male, age 51, unknown 25.7
2021 Male, age 53, unknown 24.7
2410 Female, age 72, unknown 24.0
1915 Female, age 42, unknown 23.3
2223 Female, age 72, unknown 21.7
2218 Male, age 76, both hemispheres 21.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 20.2
Min nTPM: 5.7
Std nTPM: 2.3
Median nTPM: 10.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 17.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 17.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 16.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 15.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 14.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 14.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 17.4
Sample A Female 19.5
Sample B Female 17.4
Sample C Male 19.6
Sample D Male 21.1
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 26.6
Min nTPM: 18.6
Sample A Female 26.6
Sample B Female 19.5
Sample C Male 18.6
Sample D Male 18.7
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 22.4
Min nTPM: 19.8
Sample B Female 19.8
Sample C Male 22.4
Sample D Male 20.6
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.9
Sample A Female 20.4
Sample B Female 16.9
Sample C Male 17.6
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.8
Sample A Male 15.7
Sample B Male 12.3
Sample C Female 11.8
Sample D Female 13.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69134346 Antisense, RP_050321_02_G12, Mouse strain C57BL/6J (56 days, male) 0.8

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