HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:83.2 nTPM
GTEx:43.7 nTPM
FANTOM5:140.6 Scaled Tags Per Million
Pig:95.8 nTPM
Mouse:65.1 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 83.2
Sample id Sample description nTPM
Hippocampus
nTPM: 67.4
2529 Female, age 94, left hemisphere 76.3
1911 Female, age 85, right hemisphere 69.8
1855 Male, age 76, left hemisphere 67.1
2148 Female, age 91, left hemisphere 66.8
2621 Female, age 67, right hemisphere 62.7
1898 Male, age 80, left hemisphere 61.5
Dentate gyrus
nTPM: 60.2
2528 Male, age 74, both hemispheres 67.7
2246 Female, age 85, both hemispheres 65.1
2531 Female, age 67, both hemispheres 62.0
2530 Female, age 94, left hemisphere 58.0
2010 Male, age 76, both hemispheres 56.0
1927 Female, age 91, both hemispheres 52.2
Entorhinal gyrus
nTPM: 57.3
2686 Male, age 75, right hemisphere 69.1
2117 Female, age 91, right hemisphere 68.1
1938 Female, age 85, left hemisphere 62.1
1787 Male, age 76, left hemisphere 55.8
2764 Male, age 80, right hemisphere 44.9
2613 Female, age 94, left hemisphere 43.8
Hippocampus, CA1
nTPM: 61.9
2527 Male, age 74, both hemispheres 77.0
1873 Female, age 85, both hemispheres 64.1
2045 Male, age 76, both hemispheres 62.9
2082 Female, age 91, right hemisphere 61.2
2749 Male, age 80, left hemisphere 44.5
Hippocampus, CA2
nTPM: 63.2
2249 Male, age 74, both hemispheres 84.8
1940 Female, age 85, left hemisphere 71.1
2113 Female, age 91, right hemisphere 64.3
2437 Female, age 94, left hemisphere 61.2
1963 Male, age 80, left hemisphere 56.1
1892 Male, age 76, both hemispheres 41.9
Hippocampus, CA3
nTPM: 83.2
2436 Male, age 74, both hemispheres 183.6
2861 Female, age 67, both hemispheres 81.1
1891 Female, age 85, both hemispheres 66.2
1867 Male, age 76, both hemispheres 56.5
2137 Male, age 80, left hemisphere 56.1
2620 Female, age 94, left hemisphere 55.8
Parahippocampal cortex
nTPM: 60.1
2692 Male, age 74, both hemispheres 72.7
2622 Female, age 67, right hemisphere 66.9
1933 Female, age 85, both hemispheres 64.9
2250 Female, age 67, right hemisphere 64.9
2018 Male, age 76, both hemispheres 59.8
2245 Female, age 91, both hemispheres 59.8
2693 Female, age 94, both hemispheres 59.0
1990 Female, age 91, right hemisphere 58.8
1850 Male, age 80, both hemispheres 52.1
2532 Female, age 72, left hemisphere 42.3
Perirhinal gyrus
nTPM: 52.6
1841 Female, age 85, right hemisphere 62.9
2521 Female, age 94, right hemisphere 54.5
1847 Female, age 91, left hemisphere 51.4
1794 Male, age 80, right hemisphere 50.2
2848 Male, age 76, right hemisphere 44.3
Subiculum
nTPM: 63.9
2619 Male, age 74, both hemispheres 82.0
2729 Female, age 91, right hemisphere 72.6
2438 Female, age 94, left hemisphere 62.5
2042 Male, age 76, both hemispheres 60.1
1977 Female, age 85, both hemispheres 55.9
1901 Male, age 80, both hemispheres 50.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.7
Samples: 197

Max nTPM: 218.2
Min nTPM: 17.5
Std nTPM: 20.5
Median nTPM: 40.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 218.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 122.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 97.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 85.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 85.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 84.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 84.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 82.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 79.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 76.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 75.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.6
FF:10153-102I9 76 years, female 170.1
FF:10169-103B7 60 years, female 111.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 95.8
Pig sample Sample description nTPM
Subiculum
nTPM: 95.8
Samples: 4

Max nTPM: 107.0
Min nTPM: 70.5
Sample A Female 107.0
Sample B Female 70.5
Sample C Male 104.7
Sample D Male 100.9
Dorsal hippocampus
nTPM: 59.3
Samples: 4

Max nTPM: 75.3
Min nTPM: 48.6
Sample A Female 63.4
Sample B Female 48.6
Sample C Male 75.3
Sample D Male 49.7
Entorhinal cortex
nTPM: 81.6
Samples: 4

Max nTPM: 100.8
Min nTPM: 60.5
Sample A Female 100.8
Sample B Female 73.1
Sample C Male 91.9
Sample D Male 60.5
Ventral hippocampus
nTPM: 77.0
Samples: 4

Max nTPM: 119.2
Min nTPM: 60.3
Sample A Female 65.9
Sample B Female 62.4
Sample C Male 119.2
Sample D Male 60.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.2
Samples: 4

Max nTPM: 71.6
Min nTPM: 55.7
Sample A Male 64.9
Sample B Male 55.7
Sample C Female 68.5
Sample D Female 71.6
Hippocampal formation
nTPM: 55.0
Samples: 4

Max nTPM: 67.8
Min nTPM: 48.9
Sample A Male 50.1
Sample B Male 48.9
Sample C Female 53.2
Sample D Female 67.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
73769324 Antisense, RP_051121_04_B09, Mouse strain C57BL/6J (56 days, male) 3.7
69549650 Antisense, RP_050315_01_B12, Mouse strain C57BL/6J (56 days, male) 3.6

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