MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:55.6 nTPM
GTEx:25.0 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:20.4 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2586 Male, age 75, left hemisphere 72.9
2219 Male, age 76, both hemispheres 57.0
2019 Male, age 18, unknown 54.7
1827 Male, age 72, unknown 52.9
2828 Female, age 72, unknown 52.8
2666 Male, age 74, left hemisphere 52.0
2411 Female, age 72, unknown 46.6
1830 Male, age 51, unknown 43.7
1833 Male, age 53, unknown 42.5
1870 Female, age 42, unknown 42.4
Dorsal raphe nucleus
nTPM: 45.8
2750 Male, age 76, both hemispheres 47.5
2298 Female, age 72, unknown 47.0
2047 Male, age 72, unknown 46.2
1828 Male, age 53, unknown 45.7
2016 Female, age 72, unknown 42.5
Inferior colliculus
nTPM: 45.7
1890 Male, age 53, unknown 49.7
2097 Female, age 72, unknown 49.4
1848 Female, age 42, unknown 43.5
2849 Male, age 72, unknown 40.4
Median raphe nucleus
nTPM: 50.3
2220 Male, age 76, midline 50.3
Periaquaductal grey, anterior
nTPM: 55.6
1795 Male, age 51, unknown 59.1
2502 Female, age 75, unknown 55.5
1947 Male, age 18, unknown 52.3
Periaquaductal grey, dorsal
nTPM: 44.1
2464 Female, age 72, unknown 45.8
1840 Male, age 53, unknown 45.0
1831 Male, age 72, unknown 44.4
2850 Male, age 76, both hemispheres 41.4
Periaquaductal grey, lateral
nTPM: 47.8
2140 Male, age 76, both hemispheres 49.0
2272 Male, age 74, both hemispheres 48.4
2053 Male, age 18, unknown 46.0
Pretectal area
nTPM: 53.6
1816 Male, age 51, unknown 66.6
1944 Female, age 72, unknown 60.7
2007 Male, age 72, unknown 58.2
2667 Female, age 75, unknown 54.7
1817 Female, age 42, unknown 54.3
2407 Male, age 75, both hemispheres 54.1
1815 Male, age 53, unknown 53.6
2316 Male, age 76, right hemisphere 53.1
2825 Male, age 18, unknown 45.0
2273 Male, age 74, both hemispheres 44.8
2224 Female, age 72, unknown 44.7
Red nucleus
nTPM: 48.5
2584 Male, age 75, left hemisphere 57.1
2588 Male, age 74, left hemisphere 56.2
2785 Male, age 18, unknown 54.6
2227 Male, age 72, unknown 52.6
2769 Male, age 72, unknown 52.5
2725 Female, age 75, unknown 47.9
2823 Male, age 76, right hemisphere 46.8
2503 Female, age 72, unknown 46.7
1904 Male, age 53, unknown 44.5
1865 Male, age 51, unknown 42.6
1954 Female, age 42, unknown 41.4
1821 Female, age 72, unknown 38.7
Substantia nigra
nTPM: 54.1
1916 Female, age 42, unknown 63.8
2665 Male, age 74, both hemispheres 61.3
1851 Male, age 51, unknown 58.9
2583 Male, age 75, right hemisphere 56.1
1941 Male, age 53, unknown 54.6
1889 Female, age 72, unknown 51.8
2699 Male, age 18, unknown 49.9
2409 Female, age 72, unknown 49.6
2590 Female, age 75, unknown 49.6
2241 Male, age 72, unknown 45.7
Superior colliculus
nTPM: 52.7
2261 Male, age 18, unknown 60.8
2087 Female, age 72, unknown 60.1
2664 Male, age 75, both hemispheres 58.9
1796 Male, age 53, unknown 57.9
2668 Female, age 75, unknown 55.6
1995 Male, age 72, unknown 50.5
1913 Female, age 42, unknown 48.0
1895 Male, age 76, right hemisphere 45.8
1839 Male, age 51, unknown 45.0
2587 Male, age 74, left hemisphere 44.2
Ventral tegmental area
nTPM: 51.7
1915 Female, age 42, unknown 54.3
1942 Male, age 51, unknown 54.3
2021 Male, age 53, unknown 53.5
2218 Male, age 76, both hemispheres 53.0
2410 Female, age 72, unknown 50.4
2223 Female, age 72, unknown 44.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.0
Samples: 139

Max nTPM: 47.5
Min nTPM: 15.3
Std nTPM: 5.7
Median nTPM: 24.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 42.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 37.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 35.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 35.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 35.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 35.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 33.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.3
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 19.9
Sample C Male 22.3
Sample D Male 24.0
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.2
Sample A Female 19.7
Sample B Female 19.2
Sample C Male 24.8
Sample D Male 22.2
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 17.5
Min nTPM: 16.7
Sample B Female 17.1
Sample C Male 17.5
Sample D Male 16.7
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 21.1
Sample C Male 22.6
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 17.0
Sample A Male 21.3
Sample B Male 24.8
Sample C Female 18.6
Sample D Female 17.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
67787331 Antisense, RP_040916_02_G08, Mouse strain C57BL/6J (56 days, male) 8.1

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