MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.8 nTPM
HPA Brain:127.3 nTPM
GTEx:63.8 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:57.2 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.3
2666 Male, age 74, left hemisphere 175.7
2586 Male, age 75, left hemisphere 155.0
2828 Female, age 72, unknown 133.8
2411 Female, age 72, unknown 131.0
1827 Male, age 72, unknown 121.1
2219 Male, age 76, both hemispheres 118.5
2019 Male, age 18, unknown 115.9
1830 Male, age 51, unknown 113.6
1870 Female, age 42, unknown 104.9
1833 Male, age 53, unknown 103.9
Dorsal raphe nucleus
nTPM: 107.2
2750 Male, age 76, both hemispheres 119.1
2047 Male, age 72, unknown 111.1
1828 Male, age 53, unknown 108.0
2298 Female, age 72, unknown 107.8
2016 Female, age 72, unknown 90.3
Inferior colliculus
nTPM: 91.2
1848 Female, age 42, unknown 97.2
1890 Male, age 53, unknown 92.4
2097 Female, age 72, unknown 88.2
2849 Male, age 72, unknown 86.8
Median raphe nucleus
nTPM: 99.1
2220 Male, age 76, midline 99.1
Periaquaductal grey, anterior
nTPM: 126.6
2502 Female, age 75, unknown 131.2
1947 Male, age 18, unknown 124.5
1795 Male, age 51, unknown 123.9
Periaquaductal grey, dorsal
nTPM: 84.1
2464 Female, age 72, unknown 102.4
1840 Male, age 53, unknown 89.0
1831 Male, age 72, unknown 87.6
2850 Male, age 76, both hemispheres 57.6
Periaquaductal grey, lateral
nTPM: 82.4
2053 Male, age 18, unknown 98.2
2272 Male, age 74, both hemispheres 80.5
2140 Male, age 76, both hemispheres 68.4
Pretectal area
nTPM: 105.2
1816 Male, age 51, unknown 127.8
2007 Male, age 72, unknown 125.7
1944 Female, age 72, unknown 121.6
1817 Female, age 42, unknown 114.4
2407 Male, age 75, both hemispheres 112.0
1815 Male, age 53, unknown 111.3
2825 Male, age 18, unknown 98.8
2224 Female, age 72, unknown 96.3
2667 Female, age 75, unknown 95.5
2316 Male, age 76, right hemisphere 83.6
2273 Male, age 74, both hemispheres 70.6
Red nucleus
nTPM: 119.8
2584 Male, age 75, left hemisphere 164.1
2588 Male, age 74, left hemisphere 135.5
2769 Male, age 72, unknown 130.5
2227 Male, age 72, unknown 126.0
1904 Male, age 53, unknown 124.7
2785 Male, age 18, unknown 119.6
2503 Female, age 72, unknown 116.6
1865 Male, age 51, unknown 109.1
1821 Female, age 72, unknown 108.0
1954 Female, age 42, unknown 107.0
2823 Male, age 76, right hemisphere 105.3
2725 Female, age 75, unknown 91.5
Substantia nigra
nTPM: 118.0
1916 Female, age 42, unknown 144.8
2665 Male, age 74, both hemispheres 139.9
1851 Male, age 51, unknown 135.0
2583 Male, age 75, right hemisphere 133.9
1941 Male, age 53, unknown 122.5
1889 Female, age 72, unknown 112.4
2699 Male, age 18, unknown 105.9
2590 Female, age 75, unknown 100.9
2409 Female, age 72, unknown 92.6
2241 Male, age 72, unknown 92.0
Superior colliculus
nTPM: 118.1
2668 Female, age 75, unknown 181.7
1796 Male, age 53, unknown 127.1
2261 Male, age 18, unknown 121.7
2664 Male, age 75, both hemispheres 121.3
2087 Female, age 72, unknown 117.1
1913 Female, age 42, unknown 110.9
1895 Male, age 76, right hemisphere 102.9
1995 Male, age 72, unknown 102.2
1839 Male, age 51, unknown 99.8
2587 Male, age 74, left hemisphere 96.5
Ventral tegmental area
nTPM: 118.7
2410 Female, age 72, unknown 136.3
2223 Female, age 72, unknown 126.1
1942 Male, age 51, unknown 118.3
1915 Female, age 42, unknown 117.6
2218 Male, age 76, both hemispheres 114.6
2021 Male, age 53, unknown 99.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.8
Samples: 139

Max nTPM: 154.5
Min nTPM: 27.6
Std nTPM: 18.5
Median nTPM: 62.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 154.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 134.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 106.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 100.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 96.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 92.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 92.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 84.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.5
FF:10158-103A5 76 years, female 80.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.7
Samples: 4

Max nTPM: 54.4
Min nTPM: 37.4
Sample A Female 53.2
Sample B Female 37.4
Sample C Male 54.4
Sample D Male 45.8
Midbrain
nTPM: 49.9
Samples: 4

Max nTPM: 61.8
Min nTPM: 41.2
Sample A Female 55.2
Sample B Female 41.2
Sample C Male 61.8
Sample D Male 41.4
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 38.7
Min nTPM: 31.2
Sample B Female 37.5
Sample C Male 38.7
Sample D Male 31.2
Superior colliculi
nTPM: 46.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 41.5
Sample A Female 45.5
Sample B Female 41.5
Sample C Male 49.0
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 58.9
Min nTPM: 55.5
Sample A Male 55.5
Sample B Male 58.9
Sample C Female 57.6
Sample D Female 57.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
227739 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 10.2
276264 Antisense, RP_040609_01_C09, Mouse strain C57BL/6J (56 days, male) 4.5

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