MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.1 nTPM
HPA Brain:336.5 nTPM
GTEx:83.1 nTPM
FANTOM5:505.9 Scaled Tags Per Million
Pig:35.1 nTPM
Mouse:24.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 336.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 256.4
2411 Female, age 72, unknown 311.3
2019 Male, age 18, unknown 305.3
1830 Male, age 51, unknown 300.8
1870 Female, age 42, unknown 284.4
1833 Male, age 53, unknown 283.1
2828 Female, age 72, unknown 264.6
2586 Male, age 75, left hemisphere 235.8
2666 Male, age 74, left hemisphere 220.5
1827 Male, age 72, unknown 184.2
2219 Male, age 76, both hemispheres 173.7
Dorsal raphe nucleus
nTPM: 206.5
2750 Male, age 76, both hemispheres 328.3
2016 Female, age 72, unknown 217.9
1828 Male, age 53, unknown 189.9
2047 Male, age 72, unknown 154.9
2298 Female, age 72, unknown 141.5
Inferior colliculus
nTPM: 170.3
1848 Female, age 42, unknown 178.4
2849 Male, age 72, unknown 169.4
1890 Male, age 53, unknown 168.9
2097 Female, age 72, unknown 164.5
Median raphe nucleus
nTPM: 131.9
2220 Male, age 76, midline 131.9
Periaquaductal grey, anterior
nTPM: 196.7
2502 Female, age 75, unknown 223.4
1947 Male, age 18, unknown 202.6
1795 Male, age 51, unknown 164.3
Periaquaductal grey, dorsal
nTPM: 132.5
2464 Female, age 72, unknown 212.3
1831 Male, age 72, unknown 121.2
2850 Male, age 76, both hemispheres 108.2
1840 Male, age 53, unknown 88.3
Periaquaductal grey, lateral
nTPM: 172.7
2272 Male, age 74, both hemispheres 206.6
2053 Male, age 18, unknown 164.0
2140 Male, age 76, both hemispheres 147.5
Pretectal area
nTPM: 190.5
2316 Male, age 76, right hemisphere 297.3
1815 Male, age 53, unknown 223.2
2667 Female, age 75, unknown 213.6
2007 Male, age 72, unknown 202.5
2407 Male, age 75, both hemispheres 201.0
1817 Female, age 42, unknown 196.6
2825 Male, age 18, unknown 179.9
2273 Male, age 74, both hemispheres 174.2
2224 Female, age 72, unknown 154.1
1816 Male, age 51, unknown 127.0
1944 Female, age 72, unknown 126.5
Red nucleus
nTPM: 336.5
2769 Male, age 72, unknown 393.6
2227 Male, age 72, unknown 388.9
1904 Male, age 53, unknown 387.7
2785 Male, age 18, unknown 383.3
1865 Male, age 51, unknown 372.8
2503 Female, age 72, unknown 361.8
1821 Female, age 72, unknown 335.9
2823 Male, age 76, right hemisphere 327.0
1954 Female, age 42, unknown 301.4
2588 Male, age 74, left hemisphere 297.9
2584 Male, age 75, left hemisphere 246.3
2725 Female, age 75, unknown 240.9
Substantia nigra
nTPM: 193.3
1851 Male, age 51, unknown 232.3
2590 Female, age 75, unknown 226.8
2409 Female, age 72, unknown 219.2
2583 Male, age 75, right hemisphere 219.2
1941 Male, age 53, unknown 200.3
1889 Female, age 72, unknown 192.5
2699 Male, age 18, unknown 178.2
1916 Female, age 42, unknown 161.9
2241 Male, age 72, unknown 153.0
2665 Male, age 74, both hemispheres 149.6
Superior colliculus
nTPM: 224.4
1995 Male, age 72, unknown 322.4
1913 Female, age 42, unknown 309.6
1895 Male, age 76, right hemisphere 261.0
1839 Male, age 51, unknown 242.3
2587 Male, age 74, left hemisphere 231.6
1796 Male, age 53, unknown 204.0
2668 Female, age 75, unknown 191.2
2261 Male, age 18, unknown 171.8
2664 Male, age 75, both hemispheres 162.7
2087 Female, age 72, unknown 147.2
Ventral tegmental area
nTPM: 210.6
2410 Female, age 72, unknown 276.5
2223 Female, age 72, unknown 226.5
1915 Female, age 42, unknown 200.5
1942 Male, age 51, unknown 197.6
2021 Male, age 53, unknown 197.6
2218 Male, age 76, both hemispheres 164.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.1
Samples: 139

Max nTPM: 357.7
Min nTPM: 34.8
Std nTPM: 43.7
Median nTPM: 70.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 357.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 235.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 200.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 187.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 178.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 173.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 167.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 166.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 166.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 155.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 148.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 505.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 505.9
FF:10158-103A5 76 years, female 505.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 42.1
Min nTPM: 26.7
Sample A Female 31.4
Sample B Female 42.1
Sample C Male 26.7
Sample D Male 40.5
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 41.9
Min nTPM: 21.6
Sample A Female 41.9
Sample B Female 28.6
Sample C Male 22.6
Sample D Male 21.6
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 27.1
Min nTPM: 23.7
Sample B Female 26.8
Sample C Male 27.1
Sample D Male 23.7
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 39.3
Min nTPM: 25.4
Sample A Female 33.8
Sample B Female 39.3
Sample C Male 25.4
Sample D Male 28.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.6
Sample A Male 26.1
Sample B Male 23.6
Sample C Female 25.0
Sample D Female 23.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69527860 Antisense, RP_050421_02_F04, Mouse strain C57BL/6J (56 days, male) 1.2
74658032 Antisense, RP_060220_04_C05, Mouse strain C57BL/6J (56 days, male) 0.4

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