MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:18.1 nTPM
GTEx:14.7 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:15.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2586 Male, age 75, left hemisphere 26.4
1827 Male, age 72, unknown 19.7
2828 Female, age 72, unknown 19.1
2666 Male, age 74, left hemisphere 18.5
2019 Male, age 18, unknown 15.8
1870 Female, age 42, unknown 14.5
1833 Male, age 53, unknown 13.7
2411 Female, age 72, unknown 13.1
1830 Male, age 51, unknown 12.3
2219 Male, age 76, both hemispheres 11.6
Dorsal raphe nucleus
nTPM: 15.9
2298 Female, age 72, unknown 19.0
2047 Male, age 72, unknown 16.0
1828 Male, age 53, unknown 15.9
2016 Female, age 72, unknown 15.8
2750 Male, age 76, both hemispheres 13.0
Inferior colliculus
nTPM: 16.3
2097 Female, age 72, unknown 17.6
2849 Male, age 72, unknown 16.2
1890 Male, age 53, unknown 15.7
1848 Female, age 42, unknown 15.6
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 16.9
1795 Male, age 51, unknown 19.2
2502 Female, age 75, unknown 15.9
1947 Male, age 18, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 17.5
1840 Male, age 53, unknown 20.1
2850 Male, age 76, both hemispheres 18.6
1831 Male, age 72, unknown 17.6
2464 Female, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 17.0
2272 Male, age 74, both hemispheres 18.0
2053 Male, age 18, unknown 17.9
2140 Male, age 76, both hemispheres 15.0
Pretectal area
nTPM: 18.1
1816 Male, age 51, unknown 24.3
1944 Female, age 72, unknown 20.0
2007 Male, age 72, unknown 19.7
1815 Male, age 53, unknown 19.3
1817 Female, age 42, unknown 19.3
2407 Male, age 75, both hemispheres 18.3
2667 Female, age 75, unknown 17.9
2825 Male, age 18, unknown 16.5
2273 Male, age 74, both hemispheres 16.3
2224 Female, age 72, unknown 15.1
2316 Male, age 76, right hemisphere 12.9
Red nucleus
nTPM: 15.2
2584 Male, age 75, left hemisphere 19.2
2588 Male, age 74, left hemisphere 16.2
2785 Male, age 18, unknown 16.2
1954 Female, age 42, unknown 15.7
2725 Female, age 75, unknown 15.4
1821 Female, age 72, unknown 15.2
1904 Male, age 53, unknown 15.2
2769 Male, age 72, unknown 14.9
1865 Male, age 51, unknown 14.4
2503 Female, age 72, unknown 13.7
2227 Male, age 72, unknown 13.6
2823 Male, age 76, right hemisphere 13.2
Substantia nigra
nTPM: 15.0
2583 Male, age 75, right hemisphere 19.2
2665 Male, age 74, both hemispheres 18.2
1889 Female, age 72, unknown 16.2
1851 Male, age 51, unknown 14.9
1916 Female, age 42, unknown 14.6
2590 Female, age 75, unknown 14.2
2409 Female, age 72, unknown 13.4
2699 Male, age 18, unknown 13.4
2241 Male, age 72, unknown 13.3
1941 Male, age 53, unknown 12.6
Superior colliculus
nTPM: 17.9
2664 Male, age 75, both hemispheres 24.6
2261 Male, age 18, unknown 20.4
1796 Male, age 53, unknown 19.9
2668 Female, age 75, unknown 19.4
2087 Female, age 72, unknown 18.9
1995 Male, age 72, unknown 16.1
1839 Male, age 51, unknown 15.9
2587 Male, age 74, left hemisphere 15.1
1895 Male, age 76, right hemisphere 14.4
1913 Female, age 42, unknown 14.0
Ventral tegmental area
nTPM: 14.8
2223 Female, age 72, unknown 17.1
1915 Female, age 42, unknown 16.0
2021 Male, age 53, unknown 14.7
1942 Male, age 51, unknown 14.4
2410 Female, age 72, unknown 13.6
2218 Male, age 76, both hemispheres 13.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 22.7
Min nTPM: 6.2
Std nTPM: 3.0
Median nTPM: 14.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 22.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 22.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 21.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 21.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 20.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 19.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 19.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 19.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 19.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 18.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.1
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.0
Sample A Female 12.7
Sample B Female 9.1
Sample C Male 9.5
Sample D Male 9.0
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 16.4
Min nTPM: 10.3
Sample A Female 16.4
Sample B Female 10.6
Sample C Male 10.3
Sample D Male 10.8
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 16.8
Min nTPM: 12.6
Sample B Female 12.6
Sample C Male 16.8
Sample D Male 15.6
Superior colliculi
nTPM: 12.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 9.9
Sample A Female 14.7
Sample B Female 14.0
Sample C Male 9.9
Sample D Male 10.8

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