MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.4 nTPM
HPA Brain:65.7 nTPM
GTEx:34.4 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:79.7 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.5
2666 Male, age 74, left hemisphere 63.0
2019 Male, age 18, unknown 53.8
1833 Male, age 53, unknown 51.2
2411 Female, age 72, unknown 50.1
1870 Female, age 42, unknown 49.8
1830 Male, age 51, unknown 48.7
2219 Male, age 76, both hemispheres 48.5
2586 Male, age 75, left hemisphere 45.2
1827 Male, age 72, unknown 38.5
2828 Female, age 72, unknown 35.8
Dorsal raphe nucleus
nTPM: 52.8
1828 Male, age 53, unknown 67.6
2047 Male, age 72, unknown 53.7
2016 Female, age 72, unknown 48.1
2298 Female, age 72, unknown 47.4
2750 Male, age 76, both hemispheres 47.4
Inferior colliculus
nTPM: 46.9
2849 Male, age 72, unknown 51.3
1848 Female, age 42, unknown 49.2
1890 Male, age 53, unknown 47.3
2097 Female, age 72, unknown 39.9
Median raphe nucleus
nTPM: 48.1
2220 Male, age 76, midline 48.1
Periaquaductal grey, anterior
nTPM: 44.1
1947 Male, age 18, unknown 53.9
2502 Female, age 75, unknown 45.7
1795 Male, age 51, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 45.7
2850 Male, age 76, both hemispheres 51.1
1840 Male, age 53, unknown 49.8
2464 Female, age 72, unknown 43.7
1831 Male, age 72, unknown 38.4
Periaquaductal grey, lateral
nTPM: 45.8
2140 Male, age 76, both hemispheres 55.5
2272 Male, age 74, both hemispheres 45.2
2053 Male, age 18, unknown 36.8
Pretectal area
nTPM: 50.0
1816 Male, age 51, unknown 63.5
1944 Female, age 72, unknown 58.9
2007 Male, age 72, unknown 51.2
2316 Male, age 76, right hemisphere 50.0
1817 Female, age 42, unknown 49.5
2224 Female, age 72, unknown 49.2
2407 Male, age 75, both hemispheres 48.8
2667 Female, age 75, unknown 47.5
2825 Male, age 18, unknown 47.3
2273 Male, age 74, both hemispheres 43.7
1815 Male, age 53, unknown 39.8
Red nucleus
nTPM: 65.7
1821 Female, age 72, unknown 80.2
1954 Female, age 42, unknown 77.5
2769 Male, age 72, unknown 77.3
2227 Male, age 72, unknown 75.5
2823 Male, age 76, right hemisphere 72.1
1865 Male, age 51, unknown 65.6
1904 Male, age 53, unknown 65.4
2503 Female, age 72, unknown 60.0
2588 Male, age 74, left hemisphere 59.5
2725 Female, age 75, unknown 55.4
2785 Male, age 18, unknown 51.4
2584 Male, age 75, left hemisphere 48.9
Substantia nigra
nTPM: 61.6
1916 Female, age 42, unknown 74.1
1941 Male, age 53, unknown 72.5
2699 Male, age 18, unknown 67.4
2665 Male, age 74, both hemispheres 66.4
2241 Male, age 72, unknown 64.0
1851 Male, age 51, unknown 62.0
2590 Female, age 75, unknown 57.9
2583 Male, age 75, right hemisphere 51.3
1889 Female, age 72, unknown 50.6
2409 Female, age 72, unknown 49.7
Superior colliculus
nTPM: 47.9
2087 Female, age 72, unknown 63.1
2668 Female, age 75, unknown 57.8
2261 Male, age 18, unknown 49.8
1839 Male, age 51, unknown 48.8
2587 Male, age 74, left hemisphere 48.7
1895 Male, age 76, right hemisphere 48.5
2664 Male, age 75, both hemispheres 44.5
1995 Male, age 72, unknown 41.2
1913 Female, age 42, unknown 39.6
1796 Male, age 53, unknown 37.3
Ventral tegmental area
nTPM: 53.2
1915 Female, age 42, unknown 60.6
2410 Female, age 72, unknown 58.9
2218 Male, age 76, both hemispheres 57.2
1942 Male, age 51, unknown 50.7
2223 Female, age 72, unknown 46.6
2021 Male, age 53, unknown 45.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.4
Samples: 139

Max nTPM: 81.4
Min nTPM: 20.4
Std nTPM: 9.1
Median nTPM: 33.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 55.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 54.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 52.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 50.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 49.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 47.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.4
FF:10158-103A5 76 years, female 59.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.6
Sample A Female 22.2
Sample B Female 21.6
Sample C Male 21.6
Sample D Male 26.6
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 38.4
Min nTPM: 19.3
Sample A Female 38.4
Sample B Female 21.0
Sample C Male 19.7
Sample D Male 19.3
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 23.7
Min nTPM: 19.6
Sample B Female 20.7
Sample C Male 23.7
Sample D Male 19.6
Superior colliculi
nTPM: 25.7
Samples: 4

Max nTPM: 30.6
Min nTPM: 22.7
Sample A Female 23.1
Sample B Female 22.7
Sample C Male 30.6
Sample D Male 26.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.7
Samples: 4

Max nTPM: 87.3
Min nTPM: 72.0
Sample A Male 72.0
Sample B Male 76.9
Sample C Female 87.3
Sample D Female 82.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
74638864 Antisense, RP_051214_02_D05, Mouse strain C57BL/6J (56 days, male) 4.9
74047920 Antisense, RP_051214_02_D05, Mouse strain C57BL/6J (56 days, male) 3.0
68080689 Antisense, RP_040929_01_E07, Mouse strain C57BL/6J (56 days, male) 2.0

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