MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:27.9 nTPM
GTEx:25.0 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:40.5 nTPM
Mouse:25.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.0
2219 Male, age 76, both hemispheres 26.0
2019 Male, age 18, unknown 25.8
2411 Female, age 72, unknown 24.7
1827 Male, age 72, unknown 22.8
1833 Male, age 53, unknown 22.2
1870 Female, age 42, unknown 21.3
2666 Male, age 74, left hemisphere 21.1
1830 Male, age 51, unknown 20.0
2828 Female, age 72, unknown 19.5
2586 Male, age 75, left hemisphere 16.5
Dorsal raphe nucleus
nTPM: 25.4
2298 Female, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 26.3
2047 Male, age 72, unknown 25.8
1828 Male, age 53, unknown 25.5
2016 Female, age 72, unknown 20.4
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 27.1
1890 Male, age 53, unknown 25.1
1848 Female, age 42, unknown 23.5
2849 Male, age 72, unknown 21.2
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Periaquaductal grey, anterior
nTPM: 22.7
1947 Male, age 18, unknown 24.0
2502 Female, age 75, unknown 22.8
1795 Male, age 51, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 19.1
1840 Male, age 53, unknown 19.8
2464 Female, age 72, unknown 19.8
2850 Male, age 76, both hemispheres 18.7
1831 Male, age 72, unknown 18.2
Periaquaductal grey, lateral
nTPM: 19.6
2272 Male, age 74, both hemispheres 22.6
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 16.7
Pretectal area
nTPM: 23.3
1944 Female, age 72, unknown 26.6
1817 Female, age 42, unknown 26.5
1816 Male, age 51, unknown 26.4
2007 Male, age 72, unknown 26.3
2667 Female, age 75, unknown 25.7
2224 Female, age 72, unknown 24.0
2273 Male, age 74, both hemispheres 22.9
1815 Male, age 53, unknown 22.5
2316 Male, age 76, right hemisphere 20.8
2825 Male, age 18, unknown 19.3
2407 Male, age 75, both hemispheres 15.5
Red nucleus
nTPM: 22.7
1821 Female, age 72, unknown 29.3
1954 Female, age 42, unknown 24.1
1904 Male, age 53, unknown 23.8
1865 Male, age 51, unknown 23.7
2725 Female, age 75, unknown 23.4
2503 Female, age 72, unknown 23.0
2823 Male, age 76, right hemisphere 22.6
2227 Male, age 72, unknown 22.2
2785 Male, age 18, unknown 21.9
2769 Male, age 72, unknown 21.8
2588 Male, age 74, left hemisphere 19.8
2584 Male, age 75, left hemisphere 17.2
Substantia nigra
nTPM: 27.9
1916 Female, age 42, unknown 39.3
2241 Male, age 72, unknown 32.7
1851 Male, age 51, unknown 31.8
2409 Female, age 72, unknown 31.5
1941 Male, age 53, unknown 28.1
1889 Female, age 72, unknown 26.2
2665 Male, age 74, both hemispheres 25.0
2699 Male, age 18, unknown 23.9
2590 Female, age 75, unknown 21.6
2583 Male, age 75, right hemisphere 18.5
Superior colliculus
nTPM: 21.1
1895 Male, age 76, right hemisphere 24.9
2087 Female, age 72, unknown 24.1
2587 Male, age 74, left hemisphere 23.4
2261 Male, age 18, unknown 23.1
2668 Female, age 75, unknown 22.7
1796 Male, age 53, unknown 22.0
1839 Male, age 51, unknown 19.8
1913 Female, age 42, unknown 19.0
1995 Male, age 72, unknown 17.9
2664 Male, age 75, both hemispheres 13.8
Ventral tegmental area
nTPM: 25.5
2218 Male, age 76, both hemispheres 30.1
2410 Female, age 72, unknown 29.8
1915 Female, age 42, unknown 27.5
2223 Female, age 72, unknown 23.4
1942 Male, age 51, unknown 22.1
2021 Male, age 53, unknown 20.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.0
Samples: 139

Max nTPM: 48.8
Min nTPM: 14.1
Std nTPM: 5.3
Median nTPM: 24.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 34.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 34.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 33.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 41.4
Min nTPM: 25.0
Sample A Female 41.4
Sample B Female 25.0
Sample C Male 27.6
Sample D Male 25.8
Midbrain
nTPM: 35.4
Samples: 4

Max nTPM: 42.2
Min nTPM: 29.9
Sample A Female 42.2
Sample B Female 29.9
Sample C Male 37.2
Sample D Male 32.2
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 26.8
Min nTPM: 20.0
Sample B Female 26.8
Sample C Male 24.9
Sample D Male 20.0
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 50.3
Min nTPM: 30.9
Sample A Female 45.2
Sample B Female 30.9
Sample C Male 50.3
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 24.4
Sample A Male 25.2
Sample B Male 25.2
Sample C Female 24.4
Sample D Female 26.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70598377 Antisense, RP_050412_01_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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