MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.6 nTPM
HPA Brain:165.0 nTPM
GTEx:136.6 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:968.6 nTPM
Mouse:226.2 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 165.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.9
2019 Male, age 18, unknown 259.8
1827 Male, age 72, unknown 74.1
2828 Female, age 72, unknown 69.1
2586 Male, age 75, left hemisphere 55.4
2666 Male, age 74, left hemisphere 43.6
2219 Male, age 76, both hemispheres 41.3
2411 Female, age 72, unknown 40.7
1830 Male, age 51, unknown 38.2
1833 Male, age 53, unknown 27.6
1870 Female, age 42, unknown 19.1
Dorsal raphe nucleus
nTPM: 43.1
1828 Male, age 53, unknown 117.3
2047 Male, age 72, unknown 54.7
2750 Male, age 76, both hemispheres 21.2
2016 Female, age 72, unknown 12.3
2298 Female, age 72, unknown 9.9
Inferior colliculus
nTPM: 107.8
1890 Male, age 53, unknown 170.7
2097 Female, age 72, unknown 160.1
1848 Female, age 42, unknown 81.5
2849 Male, age 72, unknown 19.0
Median raphe nucleus
nTPM: 5.1
2220 Male, age 76, midline 5.1
Periaquaductal grey, anterior
nTPM: 28.5
1795 Male, age 51, unknown 44.2
1947 Male, age 18, unknown 26.1
2502 Female, age 75, unknown 15.3
Periaquaductal grey, dorsal
nTPM: 19.2
1831 Male, age 72, unknown 41.5
2464 Female, age 72, unknown 29.5
2850 Male, age 76, both hemispheres 4.0
1840 Male, age 53, unknown 1.9
Periaquaductal grey, lateral
nTPM: 20.1
2053 Male, age 18, unknown 40.4
2272 Male, age 74, both hemispheres 15.3
2140 Male, age 76, both hemispheres 4.5
Pretectal area
nTPM: 163.1
1817 Female, age 42, unknown 404.2
1944 Female, age 72, unknown 399.2
1816 Male, age 51, unknown 356.6
2007 Male, age 72, unknown 235.8
1815 Male, age 53, unknown 138.2
2667 Female, age 75, unknown 108.5
2407 Male, age 75, both hemispheres 72.4
2316 Male, age 76, right hemisphere 38.4
2273 Male, age 74, both hemispheres 24.2
2825 Male, age 18, unknown 12.6
2224 Female, age 72, unknown 4.1
Red nucleus
nTPM: 165.0
1821 Female, age 72, unknown 249.5
2823 Male, age 76, right hemisphere 241.1
2785 Male, age 18, unknown 240.2
1865 Male, age 51, unknown 192.2
2588 Male, age 74, left hemisphere 179.2
2503 Female, age 72, unknown 157.8
1954 Female, age 42, unknown 150.3
2725 Female, age 75, unknown 149.3
1904 Male, age 53, unknown 113.0
2227 Male, age 72, unknown 109.4
2584 Male, age 75, left hemisphere 101.4
2769 Male, age 72, unknown 96.2
Substantia nigra
nTPM: 44.2
1889 Female, age 72, unknown 206.3
1916 Female, age 42, unknown 40.0
2590 Female, age 75, unknown 39.9
1941 Male, age 53, unknown 38.9
2409 Female, age 72, unknown 34.5
2583 Male, age 75, right hemisphere 30.5
1851 Male, age 51, unknown 24.8
2665 Male, age 74, both hemispheres 18.1
2699 Male, age 18, unknown 4.6
2241 Male, age 72, unknown 3.9
Superior colliculus
nTPM: 96.6
2087 Female, age 72, unknown 284.0
1913 Female, age 42, unknown 140.8
1995 Male, age 72, unknown 124.1
1895 Male, age 76, right hemisphere 121.7
2261 Male, age 18, unknown 96.0
1796 Male, age 53, unknown 59.1
2668 Female, age 75, unknown 58.7
1839 Male, age 51, unknown 38.5
2587 Male, age 74, left hemisphere 35.4
2664 Male, age 75, both hemispheres 7.3
Ventral tegmental area
nTPM: 33.6
2410 Female, age 72, unknown 78.7
2223 Female, age 72, unknown 54.6
1915 Female, age 42, unknown 34.8
2218 Male, age 76, both hemispheres 15.6
2021 Male, age 53, unknown 12.5
1942 Male, age 51, unknown 5.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.6
Samples: 139

Max nTPM: 1098.3
Min nTPM: 1.6
Std nTPM: 189.2
Median nTPM: 51.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1098.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 896.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 761.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 657.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 589.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 535.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 495.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 484.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 475.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 469.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 469.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 968.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 130.9
Samples: 4

Max nTPM: 285.2
Min nTPM: 35.3
Sample A Female 285.2
Sample B Female 50.3
Sample C Male 35.3
Sample D Male 152.9
Midbrain
nTPM: 318.1
Samples: 4

Max nTPM: 569.3
Min nTPM: 83.2
Sample A Female 180.2
Sample B Female 83.2
Sample C Male 569.3
Sample D Male 439.5
Periaqueductal gray
nTPM: 42.5
Samples: 3

Max nTPM: 72.8
Min nTPM: 25.2
Sample B Female 72.8
Sample C Male 29.4
Sample D Male 25.2
Superior colliculi
nTPM: 968.6
Samples: 4

Max nTPM: 1704.5
Min nTPM: 385.9
Sample A Female 1308.5
Sample B Female 475.4
Sample C Male 1704.5
Sample D Male 385.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 226.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 226.2
Samples: 4

Max nTPM: 234.3
Min nTPM: 220.4
Sample A Male 221.1
Sample B Male 220.4
Sample C Female 234.3
Sample D Female 229.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
75457579 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 10.5
75492814 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 9.9
75457580 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 9.8
75496180 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 9.8
75496597 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 9.6
75457591 Antisense, RP_060523_03_H07, Mouse strain C57BL/6J (56 days, male) 9.3
75492803 Antisense, RP_060523_03_E07, Mouse strain C57BL/6J (56 days, male) 9.3
75457581 Antisense, RP_060523_03_G07, Mouse strain C57BL/6J (56 days, male) 9.2
75496190 Antisense, RP_060523_03_F07, Mouse strain C57BL/6J (56 days, male) 9.2

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