MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118.5 nTPM
HPA Brain:157.5 nTPM
GTEx:118.5 nTPM
FANTOM5:162.2 Scaled Tags Per Million
Pig:167.6 nTPM
Mouse:398.9 nTPM
Allen mouse:12.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 157.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.6
2586 Male, age 75, left hemisphere 187.1
2828 Female, age 72, unknown 186.4
2019 Male, age 18, unknown 152.6
2411 Female, age 72, unknown 146.3
2666 Male, age 74, left hemisphere 143.9
1827 Male, age 72, unknown 142.0
1870 Female, age 42, unknown 121.6
1833 Male, age 53, unknown 113.8
2219 Male, age 76, both hemispheres 110.9
1830 Male, age 51, unknown 100.9
Dorsal raphe nucleus
nTPM: 135.7
2298 Female, age 72, unknown 156.3
1828 Male, age 53, unknown 149.0
2047 Male, age 72, unknown 131.1
2750 Male, age 76, both hemispheres 124.4
2016 Female, age 72, unknown 117.7
Inferior colliculus
nTPM: 128.8
2097 Female, age 72, unknown 142.3
1890 Male, age 53, unknown 135.3
1848 Female, age 42, unknown 131.7
2849 Male, age 72, unknown 105.9
Median raphe nucleus
nTPM: 116.7
2220 Male, age 76, midline 116.7
Periaquaductal grey, anterior
nTPM: 151.0
1795 Male, age 51, unknown 161.4
2502 Female, age 75, unknown 149.9
1947 Male, age 18, unknown 141.7
Periaquaductal grey, dorsal
nTPM: 120.6
2850 Male, age 76, both hemispheres 125.4
1831 Male, age 72, unknown 119.4
1840 Male, age 53, unknown 119.3
2464 Female, age 72, unknown 118.3
Periaquaductal grey, lateral
nTPM: 111.8
2272 Male, age 74, both hemispheres 115.1
2053 Male, age 18, unknown 114.0
2140 Male, age 76, both hemispheres 106.5
Pretectal area
nTPM: 157.5
1816 Male, age 51, unknown 202.6
2007 Male, age 72, unknown 193.5
1817 Female, age 42, unknown 190.8
1944 Female, age 72, unknown 190.6
2667 Female, age 75, unknown 184.4
1815 Male, age 53, unknown 166.2
2273 Male, age 74, both hemispheres 136.4
2224 Female, age 72, unknown 128.5
2407 Male, age 75, both hemispheres 120.9
2316 Male, age 76, right hemisphere 111.0
2825 Male, age 18, unknown 107.9
Red nucleus
nTPM: 122.5
2785 Male, age 18, unknown 148.6
1821 Female, age 72, unknown 142.8
2503 Female, age 72, unknown 133.8
2823 Male, age 76, right hemisphere 132.2
2725 Female, age 75, unknown 130.9
2769 Male, age 72, unknown 125.8
2227 Male, age 72, unknown 121.4
1865 Male, age 51, unknown 118.2
1954 Female, age 42, unknown 117.1
1904 Male, age 53, unknown 111.1
2588 Male, age 74, left hemisphere 96.5
2584 Male, age 75, left hemisphere 91.1
Substantia nigra
nTPM: 138.0
1916 Female, age 42, unknown 206.6
1889 Female, age 72, unknown 180.9
1851 Male, age 51, unknown 170.1
1941 Male, age 53, unknown 157.6
2699 Male, age 18, unknown 138.4
2241 Male, age 72, unknown 136.9
2409 Female, age 72, unknown 118.6
2665 Male, age 74, both hemispheres 103.4
2590 Female, age 75, unknown 91.4
2583 Male, age 75, right hemisphere 76.4
Superior colliculus
nTPM: 147.1
2087 Female, age 72, unknown 191.5
2668 Female, age 75, unknown 163.4
1796 Male, age 53, unknown 160.4
2261 Male, age 18, unknown 152.3
2587 Male, age 74, left hemisphere 150.3
2664 Male, age 75, both hemispheres 147.7
1995 Male, age 72, unknown 131.0
1913 Female, age 42, unknown 130.3
1839 Male, age 51, unknown 123.0
1895 Male, age 76, right hemisphere 120.8
Ventral tegmental area
nTPM: 139.2
1915 Female, age 42, unknown 162.8
2410 Female, age 72, unknown 155.8
2218 Male, age 76, both hemispheres 149.7
2223 Female, age 72, unknown 130.0
1942 Male, age 51, unknown 125.7
2021 Male, age 53, unknown 111.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.5
Samples: 139

Max nTPM: 258.8
Min nTPM: 38.7
Std nTPM: 34.7
Median nTPM: 116.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 258.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 232.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 209.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 197.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 193.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 190.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 187.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 185.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 184.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 171.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 170.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.2
FF:10158-103A5 76 years, female 162.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 167.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 127.9
Samples: 4

Max nTPM: 149.7
Min nTPM: 109.2
Sample A Female 149.7
Sample B Female 109.2
Sample C Male 137.9
Sample D Male 114.7
Midbrain
nTPM: 147.2
Samples: 4

Max nTPM: 192.6
Min nTPM: 130.2
Sample A Female 130.2
Sample B Female 134.2
Sample C Male 192.6
Sample D Male 131.6
Periaqueductal gray
nTPM: 105.9
Samples: 3

Max nTPM: 125.6
Min nTPM: 84.7
Sample B Female 125.6
Sample C Male 107.5
Sample D Male 84.7
Superior colliculi
nTPM: 167.6
Samples: 4

Max nTPM: 211.9
Min nTPM: 144.1
Sample A Female 167.2
Sample B Female 144.1
Sample C Male 211.9
Sample D Male 147.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 398.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 399.0
Samples: 4

Max nTPM: 415.5
Min nTPM: 377.1
Sample A Male 408.1
Sample B Male 377.1
Sample C Female 395.1
Sample D Female 415.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
67978674 Antisense, RP_040923_01_E08, Mouse strain C57BL/6J (56 days, male) 12.6

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