MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.7 nTPM
HPA Brain:31.2 nTPM
GTEx:44.7 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:164.3 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
2586 Male, age 75, left hemisphere 33.9
1827 Male, age 72, unknown 30.4
2411 Female, age 72, unknown 28.6
2828 Female, age 72, unknown 26.1
1870 Female, age 42, unknown 25.1
2019 Male, age 18, unknown 23.5
2219 Male, age 76, both hemispheres 21.5
1833 Male, age 53, unknown 20.4
1830 Male, age 51, unknown 19.1
2666 Male, age 74, left hemisphere 17.0
Dorsal raphe nucleus
nTPM: 31.2
2298 Female, age 72, unknown 43.0
2047 Male, age 72, unknown 31.9
2750 Male, age 76, both hemispheres 28.4
1828 Male, age 53, unknown 26.4
2016 Female, age 72, unknown 26.2
Inferior colliculus
nTPM: 21.8
2097 Female, age 72, unknown 25.6
1848 Female, age 42, unknown 21.8
1890 Male, age 53, unknown 20.5
2849 Male, age 72, unknown 19.5
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Periaquaductal grey, anterior
nTPM: 31.0
1795 Male, age 51, unknown 35.0
1947 Male, age 18, unknown 30.2
2502 Female, age 75, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 23.5
1840 Male, age 53, unknown 27.7
1831 Male, age 72, unknown 24.0
2464 Female, age 72, unknown 21.7
2850 Male, age 76, both hemispheres 20.6
Periaquaductal grey, lateral
nTPM: 25.9
2272 Male, age 74, both hemispheres 28.3
2053 Male, age 18, unknown 25.8
2140 Male, age 76, both hemispheres 23.7
Pretectal area
nTPM: 29.2
1816 Male, age 51, unknown 34.5
2273 Male, age 74, both hemispheres 34.2
2007 Male, age 72, unknown 33.0
2224 Female, age 72, unknown 32.6
2667 Female, age 75, unknown 31.9
1944 Female, age 72, unknown 31.1
1817 Female, age 42, unknown 29.8
1815 Male, age 53, unknown 26.5
2825 Male, age 18, unknown 25.2
2407 Male, age 75, both hemispheres 22.4
2316 Male, age 76, right hemisphere 20.3
Red nucleus
nTPM: 21.7
1821 Female, age 72, unknown 26.0
2503 Female, age 72, unknown 23.8
2785 Male, age 18, unknown 23.5
2769 Male, age 72, unknown 22.5
2588 Male, age 74, left hemisphere 22.2
2725 Female, age 75, unknown 22.2
1904 Male, age 53, unknown 21.8
2227 Male, age 72, unknown 20.7
1954 Female, age 42, unknown 20.2
2823 Male, age 76, right hemisphere 20.0
2584 Male, age 75, left hemisphere 19.8
1865 Male, age 51, unknown 18.0
Substantia nigra
nTPM: 30.3
1916 Female, age 42, unknown 39.6
1941 Male, age 53, unknown 34.4
1851 Male, age 51, unknown 33.6
2409 Female, age 72, unknown 31.7
1889 Female, age 72, unknown 30.5
2590 Female, age 75, unknown 28.1
2583 Male, age 75, right hemisphere 27.2
2665 Male, age 74, both hemispheres 26.6
2241 Male, age 72, unknown 25.8
2699 Male, age 18, unknown 25.3
Superior colliculus
nTPM: 25.8
2261 Male, age 18, unknown 33.3
1796 Male, age 53, unknown 32.0
2087 Female, age 72, unknown 27.7
2668 Female, age 75, unknown 26.7
2664 Male, age 75, both hemispheres 25.9
1839 Male, age 51, unknown 24.8
1913 Female, age 42, unknown 23.7
2587 Male, age 74, left hemisphere 23.1
1995 Male, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 19.7
Ventral tegmental area
nTPM: 29.7
1915 Female, age 42, unknown 36.1
2410 Female, age 72, unknown 31.2
1942 Male, age 51, unknown 30.0
2218 Male, age 76, both hemispheres 27.9
2021 Male, age 53, unknown 27.1
2223 Female, age 72, unknown 26.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.7
Samples: 139

Max nTPM: 90.8
Min nTPM: 20.2
Std nTPM: 12.0
Median nTPM: 43.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 90.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 78.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 72.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 68.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 67.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 66.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 66.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 37.1
Min nTPM: 21.6
Sample A Female 37.1
Sample B Female 21.6
Sample C Male 34.1
Sample D Male 36.8
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 71.7
Min nTPM: 23.2
Sample A Female 71.7
Sample B Female 27.0
Sample C Male 26.6
Sample D Male 23.2
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 26.3
Min nTPM: 22.3
Sample B Female 22.3
Sample C Male 22.4
Sample D Male 26.3
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 31.8
Min nTPM: 27.7
Sample A Female 31.8
Sample B Female 27.7
Sample C Male 31.2
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 164.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.3
Samples: 4

Max nTPM: 182.9
Min nTPM: 151.2
Sample A Male 182.9
Sample B Male 157.4
Sample C Female 151.2
Sample D Female 165.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
67936010 Antisense, RP_041102_01_A04, Mouse strain C57BL/6J (56 days, male) 6.0
71735835 Antisense, RP_051010_03_C09, Mouse strain C57BL/6J (56 days, male) 5.2

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