MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.0 nTPM
HPA Brain:45.0 nTPM
GTEx:83.0 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:55.9 nTPM
Mouse:293.0 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.1
2019 Male, age 18, unknown 47.8
2666 Male, age 74, left hemisphere 43.7
2411 Female, age 72, unknown 43.5
2219 Male, age 76, both hemispheres 42.5
1827 Male, age 72, unknown 39.4
1870 Female, age 42, unknown 38.8
1833 Male, age 53, unknown 35.4
1830 Male, age 51, unknown 32.2
2828 Female, age 72, unknown 30.6
2586 Male, age 75, left hemisphere 27.0
Dorsal raphe nucleus
nTPM: 37.1
2750 Male, age 76, both hemispheres 41.7
1828 Male, age 53, unknown 39.4
2298 Female, age 72, unknown 38.1
2047 Male, age 72, unknown 36.7
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 39.2
2097 Female, age 72, unknown 48.8
1890 Male, age 53, unknown 39.7
1848 Female, age 42, unknown 36.0
2849 Male, age 72, unknown 32.3
Median raphe nucleus
nTPM: 37.8
2220 Male, age 76, midline 37.8
Periaquaductal grey, anterior
nTPM: 37.9
2502 Female, age 75, unknown 41.7
1795 Male, age 51, unknown 36.3
1947 Male, age 18, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 36.1
2464 Female, age 72, unknown 37.3
1831 Male, age 72, unknown 36.7
1840 Male, age 53, unknown 35.8
2850 Male, age 76, both hemispheres 34.6
Periaquaductal grey, lateral
nTPM: 31.5
2272 Male, age 74, both hemispheres 33.3
2053 Male, age 18, unknown 31.2
2140 Male, age 76, both hemispheres 29.8
Pretectal area
nTPM: 42.2
1816 Male, age 51, unknown 56.4
2007 Male, age 72, unknown 52.6
1817 Female, age 42, unknown 52.2
1944 Female, age 72, unknown 51.2
1815 Male, age 53, unknown 47.8
2224 Female, age 72, unknown 39.2
2273 Male, age 74, both hemispheres 36.3
2667 Female, age 75, unknown 34.6
2825 Male, age 18, unknown 33.4
2316 Male, age 76, right hemisphere 32.7
2407 Male, age 75, both hemispheres 28.2
Red nucleus
nTPM: 40.2
2725 Female, age 75, unknown 48.4
1821 Female, age 72, unknown 46.9
2503 Female, age 72, unknown 43.3
2588 Male, age 74, left hemisphere 43.3
2785 Male, age 18, unknown 42.4
1865 Male, age 51, unknown 40.2
1954 Female, age 42, unknown 39.3
2823 Male, age 76, right hemisphere 37.3
1904 Male, age 53, unknown 36.7
2227 Male, age 72, unknown 35.1
2769 Male, age 72, unknown 34.7
2584 Male, age 75, left hemisphere 34.6
Substantia nigra
nTPM: 45.0
2241 Male, age 72, unknown 58.8
2409 Female, age 72, unknown 54.7
1916 Female, age 42, unknown 49.9
1889 Female, age 72, unknown 49.6
1851 Male, age 51, unknown 48.3
1941 Male, age 53, unknown 47.4
2665 Male, age 74, both hemispheres 42.9
2699 Male, age 18, unknown 38.9
2590 Female, age 75, unknown 33.3
2583 Male, age 75, right hemisphere 26.7
Superior colliculus
nTPM: 40.1
2087 Female, age 72, unknown 48.6
2668 Female, age 75, unknown 46.4
2587 Male, age 74, left hemisphere 46.1
1895 Male, age 76, right hemisphere 44.7
2261 Male, age 18, unknown 43.4
1913 Female, age 42, unknown 40.6
1796 Male, age 53, unknown 37.3
1995 Male, age 72, unknown 34.2
1839 Male, age 51, unknown 33.7
2664 Male, age 75, both hemispheres 25.8
Ventral tegmental area
nTPM: 40.0
2410 Female, age 72, unknown 42.3
1915 Female, age 42, unknown 41.8
2218 Male, age 76, both hemispheres 41.3
2223 Female, age 72, unknown 41.3
1942 Male, age 51, unknown 37.4
2021 Male, age 53, unknown 35.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.0
Samples: 139

Max nTPM: 162.6
Min nTPM: 50.3
Std nTPM: 16.8
Median nTPM: 79.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 162.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 137.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 134.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 120.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 119.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 118.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 118.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 113.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 112.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 107.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.3
FF:10158-103A5 76 years, female 48.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.7
Samples: 4

Max nTPM: 76.8
Min nTPM: 38.3
Sample A Female 76.8
Sample B Female 43.2
Sample C Male 60.6
Sample D Male 38.3
Midbrain
nTPM: 54.3
Samples: 4

Max nTPM: 57.1
Min nTPM: 52.6
Sample A Female 54.6
Sample B Female 53.0
Sample C Male 52.6
Sample D Male 57.1
Periaqueductal gray
nTPM: 48.0
Samples: 3

Max nTPM: 56.4
Min nTPM: 40.8
Sample B Female 40.8
Sample C Male 56.4
Sample D Male 46.8
Superior colliculi
nTPM: 55.9
Samples: 4

Max nTPM: 67.6
Min nTPM: 38.6
Sample A Female 67.6
Sample B Female 38.6
Sample C Male 60.4
Sample D Male 57.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 293.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 293.0
Samples: 4

Max nTPM: 298.9
Min nTPM: 286.8
Sample A Male 293.5
Sample B Male 298.9
Sample C Female 286.8
Sample D Female 292.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
632493 Antisense, RP_040907_01_E01, Mouse strain C57BL/6J (56 days, male) 1.6

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