MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:30.7 nTPM
GTEx:8.2 nTPM
FANTOM5:3.4 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:66.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
1830 Male, age 51, unknown 31.9
1833 Male, age 53, unknown 30.1
2219 Male, age 76, both hemispheres 29.6
1827 Male, age 72, unknown 29.1
2411 Female, age 72, unknown 28.7
2828 Female, age 72, unknown 27.6
2019 Male, age 18, unknown 27.0
2666 Male, age 74, left hemisphere 27.0
2586 Male, age 75, left hemisphere 26.8
1870 Female, age 42, unknown 25.5
Dorsal raphe nucleus
nTPM: 26.5
2047 Male, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 28.5
2016 Female, age 72, unknown 26.0
1828 Male, age 53, unknown 25.7
2298 Female, age 72, unknown 22.8
Inferior colliculus
nTPM: 29.2
2849 Male, age 72, unknown 31.6
1848 Female, age 42, unknown 29.6
1890 Male, age 53, unknown 28.7
2097 Female, age 72, unknown 26.8
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Periaquaductal grey, anterior
nTPM: 29.2
1947 Male, age 18, unknown 32.6
1795 Male, age 51, unknown 28.5
2502 Female, age 75, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 30.2
2850 Male, age 76, both hemispheres 32.1
2464 Female, age 72, unknown 30.1
1840 Male, age 53, unknown 29.6
1831 Male, age 72, unknown 29.1
Periaquaductal grey, lateral
nTPM: 30.7
2140 Male, age 76, both hemispheres 32.3
2053 Male, age 18, unknown 31.2
2272 Male, age 74, both hemispheres 28.6
Pretectal area
nTPM: 28.9
2407 Male, age 75, both hemispheres 36.4
2316 Male, age 76, right hemisphere 32.3
2825 Male, age 18, unknown 30.2
2667 Female, age 75, unknown 30.0
2273 Male, age 74, both hemispheres 29.2
2224 Female, age 72, unknown 29.1
2007 Male, age 72, unknown 26.5
1815 Male, age 53, unknown 26.3
1816 Male, age 51, unknown 26.3
1944 Female, age 72, unknown 26.3
1817 Female, age 42, unknown 24.8
Red nucleus
nTPM: 27.4
2823 Male, age 76, right hemisphere 32.2
1904 Male, age 53, unknown 30.0
2584 Male, age 75, left hemisphere 29.4
2588 Male, age 74, left hemisphere 28.6
2725 Female, age 75, unknown 27.5
1865 Male, age 51, unknown 26.8
1954 Female, age 42, unknown 26.4
2785 Male, age 18, unknown 26.3
2769 Male, age 72, unknown 25.9
2503 Female, age 72, unknown 25.5
2227 Male, age 72, unknown 25.2
1821 Female, age 72, unknown 24.7
Substantia nigra
nTPM: 26.7
2241 Male, age 72, unknown 29.5
2590 Female, age 75, unknown 29.5
1941 Male, age 53, unknown 27.9
2583 Male, age 75, right hemisphere 27.7
2409 Female, age 72, unknown 27.5
2665 Male, age 74, both hemispheres 26.4
1889 Female, age 72, unknown 26.2
1851 Male, age 51, unknown 25.0
2699 Male, age 18, unknown 24.6
1916 Female, age 42, unknown 22.5
Superior colliculus
nTPM: 28.5
2664 Male, age 75, both hemispheres 34.5
1895 Male, age 76, right hemisphere 30.4
1839 Male, age 51, unknown 29.8
1913 Female, age 42, unknown 28.8
2087 Female, age 72, unknown 28.6
2261 Male, age 18, unknown 27.7
2587 Male, age 74, left hemisphere 26.9
2668 Female, age 75, unknown 26.7
1995 Male, age 72, unknown 26.3
1796 Male, age 53, unknown 25.2
Ventral tegmental area
nTPM: 27.2
2021 Male, age 53, unknown 28.9
2218 Male, age 76, both hemispheres 28.4
2223 Female, age 72, unknown 27.8
1942 Male, age 51, unknown 27.6
2410 Female, age 72, unknown 25.3
1915 Female, age 42, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 13.9
Min nTPM: 2.1
Std nTPM: 2.0
Median nTPM: 7.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 13.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 13.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 12.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 11.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 11.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 11.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 11.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 11.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 11.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 11.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.4
FF:10158-103A5 76 years, female 3.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.4
Samples: 4

Max nTPM: 32.5
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 28.9
Sample C Male 24.5
Sample D Male 32.5
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 29.1
Min nTPM: 23.9
Sample A Female 23.9
Sample B Female 29.1
Sample C Male 26.2
Sample D Male 28.9
Periaqueductal gray
nTPM: 29.8
Samples: 3

Max nTPM: 31.1
Min nTPM: 28.4
Sample B Female 29.8
Sample C Male 28.4
Sample D Male 31.1
Superior colliculi
nTPM: 23.5
Samples: 4

Max nTPM: 27.1
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 22.7
Sample C Male 24.6
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.4
Samples: 4

Max nTPM: 72.3
Min nTPM: 59.4
Sample A Male 66.9
Sample B Male 66.9
Sample C Female 59.4
Sample D Female 72.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org