MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA Brain:90.1 nTPM
GTEx:23.5 nTPM
FANTOM5:64.0 Scaled Tags Per Million
Pig:50.5 nTPM
Mouse:45.5 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.4
2586 Male, age 75, left hemisphere 99.9
2219 Male, age 76, both hemispheres 86.5
2019 Male, age 18, unknown 84.4
2828 Female, age 72, unknown 73.0
1827 Male, age 72, unknown 71.0
1833 Male, age 53, unknown 70.7
2666 Male, age 74, left hemisphere 66.8
2411 Female, age 72, unknown 64.4
1830 Male, age 51, unknown 62.8
1870 Female, age 42, unknown 54.1
Dorsal raphe nucleus
nTPM: 60.9
2750 Male, age 76, both hemispheres 65.6
2047 Male, age 72, unknown 63.7
2298 Female, age 72, unknown 60.8
2016 Female, age 72, unknown 59.0
1828 Male, age 53, unknown 55.3
Inferior colliculus
nTPM: 71.1
2849 Male, age 72, unknown 74.1
1848 Female, age 42, unknown 73.3
2097 Female, age 72, unknown 69.5
1890 Male, age 53, unknown 67.4
Median raphe nucleus
nTPM: 78.3
2220 Male, age 76, midline 78.3
Periaquaductal grey, anterior
nTPM: 66.1
2502 Female, age 75, unknown 77.4
1795 Male, age 51, unknown 65.9
1947 Male, age 18, unknown 55.0
Periaquaductal grey, dorsal
nTPM: 71.1
2850 Male, age 76, both hemispheres 74.3
2464 Female, age 72, unknown 72.9
1840 Male, age 53, unknown 72.7
1831 Male, age 72, unknown 64.6
Periaquaductal grey, lateral
nTPM: 69.1
2140 Male, age 76, both hemispheres 86.9
2053 Male, age 18, unknown 66.0
2272 Male, age 74, both hemispheres 54.4
Pretectal area
nTPM: 90.1
1944 Female, age 72, unknown 136.6
1816 Male, age 51, unknown 128.6
2007 Male, age 72, unknown 103.9
1817 Female, age 42, unknown 99.4
1815 Male, age 53, unknown 98.4
2316 Male, age 76, right hemisphere 80.4
2667 Female, age 75, unknown 79.8
2407 Male, age 75, both hemispheres 76.8
2224 Female, age 72, unknown 66.1
2273 Male, age 74, both hemispheres 61.2
2825 Male, age 18, unknown 59.9
Red nucleus
nTPM: 69.4
2785 Male, age 18, unknown 84.0
2588 Male, age 74, left hemisphere 73.7
2584 Male, age 75, left hemisphere 70.0
1904 Male, age 53, unknown 69.9
2725 Female, age 75, unknown 69.1
2823 Male, age 76, right hemisphere 68.8
2503 Female, age 72, unknown 68.5
1865 Male, age 51, unknown 67.8
1954 Female, age 42, unknown 67.8
2769 Male, age 72, unknown 65.9
2227 Male, age 72, unknown 65.7
1821 Female, age 72, unknown 61.9
Substantia nigra
nTPM: 76.2
1889 Female, age 72, unknown 94.2
1941 Male, age 53, unknown 85.7
1916 Female, age 42, unknown 83.6
2699 Male, age 18, unknown 77.6
1851 Male, age 51, unknown 76.2
2409 Female, age 72, unknown 73.4
2241 Male, age 72, unknown 72.0
2665 Male, age 74, both hemispheres 70.8
2583 Male, age 75, right hemisphere 69.3
2590 Female, age 75, unknown 59.1
Superior colliculus
nTPM: 84.6
2087 Female, age 72, unknown 130.9
2261 Male, age 18, unknown 100.9
2668 Female, age 75, unknown 97.5
1995 Male, age 72, unknown 82.3
1796 Male, age 53, unknown 80.8
2664 Male, age 75, both hemispheres 77.4
1895 Male, age 76, right hemisphere 75.4
1913 Female, age 42, unknown 75.4
1839 Male, age 51, unknown 67.5
2587 Male, age 74, left hemisphere 57.8
Ventral tegmental area
nTPM: 70.4
2218 Male, age 76, both hemispheres 78.6
2410 Female, age 72, unknown 77.1
1915 Female, age 42, unknown 70.2
1942 Male, age 51, unknown 67.1
2223 Female, age 72, unknown 65.3
2021 Male, age 53, unknown 64.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 74.7
Min nTPM: 12.5
Std nTPM: 6.8
Median nTPM: 22.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 74.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 43.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 36.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 34.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 33.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 33.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 33.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 30.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.0
FF:10158-103A5 76 years, female 64.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.9
Samples: 4

Max nTPM: 43.7
Min nTPM: 33.5
Sample A Female 35.6
Sample B Female 33.5
Sample C Male 43.7
Sample D Male 42.6
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 70.4
Min nTPM: 25.3
Sample A Female 25.3
Sample B Female 47.5
Sample C Male 70.4
Sample D Male 58.8
Periaqueductal gray
nTPM: 41.4
Samples: 3

Max nTPM: 50.3
Min nTPM: 37.0
Sample B Female 50.3
Sample C Male 37.0
Sample D Male 37.0
Superior colliculi
nTPM: 45.3
Samples: 4

Max nTPM: 59.7
Min nTPM: 32.6
Sample A Female 38.8
Sample B Female 32.6
Sample C Male 59.7
Sample D Male 50.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 48.0
Min nTPM: 43.9
Sample A Male 43.9
Sample B Male 45.7
Sample C Female 48.0
Sample D Female 44.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
1074 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 2.0
1075 Antisense, RP_Baylor_103312, Mouse strain C57BL/6J (56 days, male) 0.7
1076 Sense, RPS_Baylor_37107, Mouse strain C57BL/6J (56 days, male) 0.0

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