HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:14.5 nTPM
HPA Brain:8.3 nTPM
GTEx:14.5 nTPM
FANTOM5:26.6 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:32.1 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002930
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 8.3
Sample id Sample description nTPM
Hippocampus
nTPM: 8.3
1898 Male, age 80, left hemisphere 10.1
1911 Female, age 85, right hemisphere 9.2
2529 Female, age 94, left hemisphere 8.5
2148 Female, age 91, left hemisphere 8.1
1855 Male, age 76, left hemisphere 7.6
2621 Female, age 67, right hemisphere 6.6
Dentate gyrus
nTPM: 6.9
2528 Male, age 74, both hemispheres 8.3
1927 Female, age 91, both hemispheres 8.0
2246 Female, age 85, both hemispheres 7.1
2010 Male, age 76, both hemispheres 6.4
2530 Female, age 94, left hemisphere 6.3
2531 Female, age 67, both hemispheres 5.0
Entorhinal gyrus
nTPM: 7.0
2117 Female, age 91, right hemisphere 10.2
1938 Female, age 85, left hemisphere 9.9
2686 Male, age 75, right hemisphere 6.6
1787 Male, age 76, left hemisphere 6.0
2764 Male, age 80, right hemisphere 5.0
2613 Female, age 94, left hemisphere 4.1
Hippocampus, CA1
nTPM: 8.0
2749 Male, age 80, left hemisphere 9.0
1873 Female, age 85, both hemispheres 8.0
2527 Male, age 74, both hemispheres 8.0
2045 Male, age 76, both hemispheres 7.7
2082 Female, age 91, right hemisphere 7.3
Hippocampus, CA2
nTPM: 7.5
2249 Male, age 74, both hemispheres 8.8
1892 Male, age 76, both hemispheres 8.6
2113 Female, age 91, right hemisphere 8.4
1940 Female, age 85, left hemisphere 7.0
2437 Female, age 94, left hemisphere 6.5
1963 Male, age 80, left hemisphere 5.8
Hippocampus, CA3
nTPM: 7.6
1867 Male, age 76, both hemispheres 10.5
1891 Female, age 85, both hemispheres 8.8
2436 Male, age 74, both hemispheres 8.8
2137 Male, age 80, left hemisphere 6.5
2861 Female, age 67, both hemispheres 5.7
2620 Female, age 94, left hemisphere 5.0
Parahippocampal cortex
nTPM: 7.1
1933 Female, age 85, both hemispheres 9.4
2693 Female, age 94, both hemispheres 8.9
2245 Female, age 91, both hemispheres 8.2
2250 Female, age 67, right hemisphere 7.8
1850 Male, age 80, both hemispheres 7.5
2018 Male, age 76, both hemispheres 7.2
1990 Female, age 91, right hemisphere 6.6
2692 Male, age 74, both hemispheres 6.4
2622 Female, age 67, right hemisphere 5.3
2532 Female, age 72, left hemisphere 4.1
Perirhinal gyrus
nTPM: 7.8
1841 Female, age 85, right hemisphere 9.6
1794 Male, age 80, right hemisphere 8.6
1847 Female, age 91, left hemisphere 7.7
2521 Female, age 94, right hemisphere 6.8
2848 Male, age 76, right hemisphere 6.4
Subiculum
nTPM: 6.6
2729 Female, age 91, right hemisphere 9.1
2042 Male, age 76, both hemispheres 7.3
2619 Male, age 74, both hemispheres 7.1
1901 Male, age 80, both hemispheres 6.6
1977 Female, age 85, both hemispheres 6.2
2438 Female, age 94, left hemisphere 3.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.5
Samples: 197

Max nTPM: 49.0
Min nTPM: 7.4
Std nTPM: 4.5
Median nTPM: 14.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 49.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 25.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 25.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 25.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 25.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 24.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 24.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 23.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 22.2
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 22.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 20.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.6
FF:10169-103B7 60 years, female 27.0
FF:10153-102I9 76 years, female 26.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Subiculum
nTPM: 11.4
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.3
Sample A Female 13.4
Sample B Female 10.3
Sample C Male 10.7
Sample D Male 11.2
Dorsal hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.6
Sample A Female 12.9
Sample B Female 9.8
Sample C Male 13.0
Sample D Male 9.6
Entorhinal cortex
nTPM: 11.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.5
Sample A Female 11.4
Sample B Female 12.0
Sample C Male 11.9
Sample D Male 10.5
Ventral hippocampus
nTPM: 10.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.8
Sample A Female 12.6
Sample B Female 10.3
Sample C Male 9.8
Sample D Male 10.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 29.6
Sample A Male 33.3
Sample B Male 34.9
Sample C Female 29.6
Sample D Female 30.7
Hippocampal formation
nTPM: 27.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.7
Sample A Male 26.7
Sample B Male 24.7
Sample C Female 25.8
Sample D Female 31.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
678708 Antisense, RP_040914_02_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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