MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA Brain:28.1 nTPM
GTEx:28.1 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:9.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.9
2411 Female, age 72, unknown 32.3
2219 Male, age 76, both hemispheres 27.7
1833 Male, age 53, unknown 27.1
1870 Female, age 42, unknown 27.0
1830 Male, age 51, unknown 26.5
1827 Male, age 72, unknown 25.1
2019 Male, age 18, unknown 25.1
2828 Female, age 72, unknown 25.0
2666 Male, age 74, left hemisphere 22.4
2586 Male, age 75, left hemisphere 20.9
Dorsal raphe nucleus
nTPM: 25.2
2750 Male, age 76, both hemispheres 28.5
2047 Male, age 72, unknown 25.2
1828 Male, age 53, unknown 24.7
2016 Female, age 72, unknown 23.9
2298 Female, age 72, unknown 23.9
Inferior colliculus
nTPM: 26.1
2097 Female, age 72, unknown 27.9
1848 Female, age 42, unknown 26.8
1890 Male, age 53, unknown 26.1
2849 Male, age 72, unknown 23.6
Median raphe nucleus
nTPM: 25.9
2220 Male, age 76, midline 25.9
Periaquaductal grey, anterior
nTPM: 25.7
1947 Male, age 18, unknown 28.6
2502 Female, age 75, unknown 26.5
1795 Male, age 51, unknown 21.9
Periaquaductal grey, dorsal
nTPM: 24.1
2464 Female, age 72, unknown 25.8
1840 Male, age 53, unknown 25.4
2850 Male, age 76, both hemispheres 22.9
1831 Male, age 72, unknown 22.2
Periaquaductal grey, lateral
nTPM: 22.9
2140 Male, age 76, both hemispheres 24.6
2053 Male, age 18, unknown 22.7
2272 Male, age 74, both hemispheres 21.5
Pretectal area
nTPM: 24.3
2224 Female, age 72, unknown 26.7
2316 Male, age 76, right hemisphere 25.7
2273 Male, age 74, both hemispheres 24.9
2007 Male, age 72, unknown 24.6
2667 Female, age 75, unknown 24.0
1944 Female, age 72, unknown 23.9
2407 Male, age 75, both hemispheres 23.8
1816 Male, age 51, unknown 23.6
1817 Female, age 42, unknown 23.6
2825 Male, age 18, unknown 23.4
1815 Male, age 53, unknown 23.3
Red nucleus
nTPM: 27.4
2503 Female, age 72, unknown 29.9
1821 Female, age 72, unknown 29.2
2588 Male, age 74, left hemisphere 28.4
1904 Male, age 53, unknown 27.8
2227 Male, age 72, unknown 27.7
2823 Male, age 76, right hemisphere 27.7
2769 Male, age 72, unknown 27.6
2785 Male, age 18, unknown 27.1
1954 Female, age 42, unknown 26.8
2725 Female, age 75, unknown 26.7
1865 Male, age 51, unknown 26.4
2584 Male, age 75, left hemisphere 23.4
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 37.6
1916 Female, age 42, unknown 30.7
1851 Male, age 51, unknown 30.5
1941 Male, age 53, unknown 26.8
2590 Female, age 75, unknown 26.4
1889 Female, age 72, unknown 25.5
2699 Male, age 18, unknown 24.6
2583 Male, age 75, right hemisphere 23.3
2409 Female, age 72, unknown 19.9
2665 Male, age 74, both hemispheres 19.5
Superior colliculus
nTPM: 23.7
1913 Female, age 42, unknown 25.8
1895 Male, age 76, right hemisphere 25.5
2587 Male, age 74, left hemisphere 25.0
1839 Male, age 51, unknown 24.8
2087 Female, age 72, unknown 24.8
2261 Male, age 18, unknown 24.2
1796 Male, age 53, unknown 23.5
2668 Female, age 75, unknown 23.2
2664 Male, age 75, both hemispheres 21.2
1995 Male, age 72, unknown 19.3
Ventral tegmental area
nTPM: 28.1
1915 Female, age 42, unknown 32.0
2218 Male, age 76, both hemispheres 29.4
2410 Female, age 72, unknown 27.7
1942 Male, age 51, unknown 27.5
2223 Female, age 72, unknown 26.5
2021 Male, age 53, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 139

Max nTPM: 54.0
Min nTPM: 17.3
Std nTPM: 5.4
Median nTPM: 27.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 47.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 37.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 37.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 35.6
Min nTPM: 19.9
Sample A Female 35.6
Sample B Female 22.4
Sample C Male 33.9
Sample D Male 19.9
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.6
Sample A Female 28.4
Sample B Female 26.6
Sample C Male 26.6
Sample D Male 23.6
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 25.5
Min nTPM: 20.3
Sample B Female 23.6
Sample C Male 25.5
Sample D Male 20.3
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 30.6
Min nTPM: 17.8
Sample A Female 30.6
Sample B Female 17.8
Sample C Male 25.0
Sample D Male 23.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.0
Sample A Male 9.6
Sample B Male 9.0
Sample C Female 10.0
Sample D Female 9.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69783148 Antisense, RP_050505_04_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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