MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.2 nTPM
HPA Brain:29.4 nTPM
GTEx:50.2 nTPM
FANTOM5:46.8 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:24.7 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
2411 Female, age 72, unknown 31.2
1870 Female, age 42, unknown 27.9
2019 Male, age 18, unknown 25.8
1827 Male, age 72, unknown 25.2
1833 Male, age 53, unknown 22.8
2828 Female, age 72, unknown 22.7
1830 Male, age 51, unknown 21.9
2666 Male, age 74, left hemisphere 20.5
2219 Male, age 76, both hemispheres 18.1
2586 Male, age 75, left hemisphere 9.7
Dorsal raphe nucleus
nTPM: 29.4
2298 Female, age 72, unknown 40.1
2750 Male, age 76, both hemispheres 29.9
1828 Male, age 53, unknown 28.3
2047 Male, age 72, unknown 24.8
2016 Female, age 72, unknown 23.8
Inferior colliculus
nTPM: 25.0
2097 Female, age 72, unknown 31.8
1848 Female, age 42, unknown 24.9
1890 Male, age 53, unknown 22.6
2849 Male, age 72, unknown 20.6
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 23.2
1947 Male, age 18, unknown 25.4
2502 Female, age 75, unknown 23.7
1795 Male, age 51, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 23.5
2850 Male, age 76, both hemispheres 27.4
2464 Female, age 72, unknown 22.6
1831 Male, age 72, unknown 22.1
1840 Male, age 53, unknown 21.9
Periaquaductal grey, lateral
nTPM: 23.1
2272 Male, age 74, both hemispheres 27.6
2053 Male, age 18, unknown 21.3
2140 Male, age 76, both hemispheres 20.3
Pretectal area
nTPM: 27.1
2273 Male, age 74, both hemispheres 34.9
1817 Female, age 42, unknown 31.4
2224 Female, age 72, unknown 31.4
1944 Female, age 72, unknown 29.9
1816 Male, age 51, unknown 29.5
2007 Male, age 72, unknown 29.2
1815 Male, age 53, unknown 25.7
2667 Female, age 75, unknown 25.6
2316 Male, age 76, right hemisphere 23.3
2825 Male, age 18, unknown 21.1
2407 Male, age 75, both hemispheres 16.4
Red nucleus
nTPM: 24.6
1821 Female, age 72, unknown 33.0
2823 Male, age 76, right hemisphere 28.5
2725 Female, age 75, unknown 26.2
2503 Female, age 72, unknown 25.9
1954 Female, age 42, unknown 25.2
1904 Male, age 53, unknown 25.0
2785 Male, age 18, unknown 24.3
1865 Male, age 51, unknown 23.2
2769 Male, age 72, unknown 23.1
2227 Male, age 72, unknown 22.9
2588 Male, age 74, left hemisphere 19.3
2584 Male, age 75, left hemisphere 18.2
Substantia nigra
nTPM: 26.9
2241 Male, age 72, unknown 35.8
1916 Female, age 42, unknown 34.5
1889 Female, age 72, unknown 33.5
1941 Male, age 53, unknown 29.9
1851 Male, age 51, unknown 29.1
2665 Male, age 74, both hemispheres 24.3
2699 Male, age 18, unknown 24.2
2590 Female, age 75, unknown 23.3
2583 Male, age 75, right hemisphere 18.8
2409 Female, age 72, unknown 15.2
Superior colliculus
nTPM: 21.9
2087 Female, age 72, unknown 26.6
1895 Male, age 76, right hemisphere 26.1
2261 Male, age 18, unknown 24.1
1913 Female, age 42, unknown 22.9
2668 Female, age 75, unknown 22.7
1796 Male, age 53, unknown 22.3
1839 Male, age 51, unknown 21.7
1995 Male, age 72, unknown 20.3
2587 Male, age 74, left hemisphere 19.6
2664 Male, age 75, both hemispheres 12.8
Ventral tegmental area
nTPM: 23.8
2218 Male, age 76, both hemispheres 28.0
1915 Female, age 42, unknown 26.4
2021 Male, age 53, unknown 22.8
1942 Male, age 51, unknown 22.3
2410 Female, age 72, unknown 22.2
2223 Female, age 72, unknown 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 101.6
Min nTPM: 34.1
Std nTPM: 11.4
Median nTPM: 48.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 101.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 82.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 80.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 78.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 78.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 67.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 67.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 66.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.8
FF:10158-103A5 76 years, female 46.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 72.6
Samples: 4

Max nTPM: 86.5
Min nTPM: 64.1
Sample A Female 86.5
Sample B Female 73.9
Sample C Male 66.0
Sample D Male 64.1
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 87.2
Min nTPM: 58.7
Sample A Female 87.2
Sample B Female 80.0
Sample C Male 66.1
Sample D Male 58.7
Periaqueductal gray
nTPM: 65.8
Samples: 3

Max nTPM: 70.9
Min nTPM: 61.3
Sample B Female 70.9
Sample C Male 65.1
Sample D Male 61.3
Superior colliculi
nTPM: 71.6
Samples: 4

Max nTPM: 75.1
Min nTPM: 66.8
Sample A Female 75.1
Sample B Female 73.3
Sample C Male 71.3
Sample D Male 66.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.7
Sample A Male 19.7
Sample B Male 28.9
Sample C Female 26.0
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
69817402 Antisense, RP_050510_03_C11, Mouse strain C57BL/6J (56 days, male) 9.0

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