MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA Brain:33.0 nTPM
GTEx:73.5 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:76.8 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
2219 Male, age 76, both hemispheres 39.0
2666 Male, age 74, left hemisphere 35.2
2586 Male, age 75, left hemisphere 32.8
1833 Male, age 53, unknown 30.7
1827 Male, age 72, unknown 30.5
1870 Female, age 42, unknown 30.1
2411 Female, age 72, unknown 29.1
1830 Male, age 51, unknown 27.8
2019 Male, age 18, unknown 26.7
2828 Female, age 72, unknown 25.7
Dorsal raphe nucleus
nTPM: 28.3
2016 Female, age 72, unknown 31.1
1828 Male, age 53, unknown 30.4
2047 Male, age 72, unknown 28.5
2750 Male, age 76, both hemispheres 26.0
2298 Female, age 72, unknown 25.7
Inferior colliculus
nTPM: 29.6
1848 Female, age 42, unknown 32.1
2849 Male, age 72, unknown 30.6
2097 Female, age 72, unknown 28.0
1890 Male, age 53, unknown 27.7
Median raphe nucleus
nTPM: 32.2
2220 Male, age 76, midline 32.2
Periaquaductal grey, anterior
nTPM: 30.1
1947 Male, age 18, unknown 33.6
2502 Female, age 75, unknown 30.0
1795 Male, age 51, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 29.7
1840 Male, age 53, unknown 34.4
2850 Male, age 76, both hemispheres 29.6
1831 Male, age 72, unknown 28.8
2464 Female, age 72, unknown 26.2
Periaquaductal grey, lateral
nTPM: 24.9
2053 Male, age 18, unknown 29.5
2140 Male, age 76, both hemispheres 24.5
2272 Male, age 74, both hemispheres 20.8
Pretectal area
nTPM: 28.8
1816 Male, age 51, unknown 32.0
1817 Female, age 42, unknown 32.0
1815 Male, age 53, unknown 31.8
1944 Female, age 72, unknown 31.3
2407 Male, age 75, both hemispheres 31.1
2825 Male, age 18, unknown 30.4
2007 Male, age 72, unknown 29.1
2667 Female, age 75, unknown 28.0
2224 Female, age 72, unknown 27.0
2316 Male, age 76, right hemisphere 22.4
2273 Male, age 74, both hemispheres 21.2
Red nucleus
nTPM: 28.6
2584 Male, age 75, left hemisphere 33.8
2725 Female, age 75, unknown 32.9
2503 Female, age 72, unknown 31.4
2588 Male, age 74, left hemisphere 30.8
1821 Female, age 72, unknown 30.4
1865 Male, age 51, unknown 28.7
2769 Male, age 72, unknown 27.4
1904 Male, age 53, unknown 26.2
1954 Female, age 42, unknown 25.7
2227 Male, age 72, unknown 25.4
2823 Male, age 76, right hemisphere 25.4
2785 Male, age 18, unknown 24.7
Substantia nigra
nTPM: 32.6
2241 Male, age 72, unknown 39.4
2665 Male, age 74, both hemispheres 34.7
2409 Female, age 72, unknown 34.6
1916 Female, age 42, unknown 34.4
2583 Male, age 75, right hemisphere 32.5
1889 Female, age 72, unknown 32.2
1851 Male, age 51, unknown 32.1
2590 Female, age 75, unknown 29.8
2699 Male, age 18, unknown 29.6
1941 Male, age 53, unknown 27.1
Superior colliculus
nTPM: 28.0
2664 Male, age 75, both hemispheres 34.9
1839 Male, age 51, unknown 29.9
2587 Male, age 74, left hemisphere 29.5
2261 Male, age 18, unknown 28.2
1796 Male, age 53, unknown 27.2
1895 Male, age 76, right hemisphere 26.6
2668 Female, age 75, unknown 26.6
2087 Female, age 72, unknown 26.5
1995 Male, age 72, unknown 25.6
1913 Female, age 42, unknown 25.3
Ventral tegmental area
nTPM: 33.0
1915 Female, age 42, unknown 35.8
1942 Male, age 51, unknown 34.0
2021 Male, age 53, unknown 33.4
2410 Female, age 72, unknown 33.2
2223 Female, age 72, unknown 31.2
2218 Male, age 76, both hemispheres 30.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 139

Max nTPM: 194.8
Min nTPM: 28.8
Std nTPM: 25.4
Median nTPM: 66.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 194.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 137.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 136.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 136.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 132.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 132.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 129.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 126.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 117.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 116.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 114.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.2
FF:10158-103A5 76 years, female 82.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 24.4
Min nTPM: 15.0
Sample A Female 24.4
Sample B Female 15.0
Sample C Male 19.0
Sample D Male 15.1
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 19.8
Min nTPM: 17.2
Sample A Female 18.4
Sample B Female 18.3
Sample C Male 17.2
Sample D Male 19.8
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 17.6
Min nTPM: 16.5
Sample B Female 17.2
Sample C Male 17.6
Sample D Male 16.5
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 21.0
Min nTPM: 13.6
Sample A Female 21.0
Sample B Female 13.6
Sample C Male 16.5
Sample D Male 18.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 76.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.9
Samples: 4

Max nTPM: 81.9
Min nTPM: 71.3
Sample A Male 81.9
Sample B Male 74.9
Sample C Female 71.3
Sample D Female 79.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
67978762 Antisense, RP_040923_01_H01, Mouse strain C57BL/6J (56 days, male) 4.3

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