HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:37.2 nTPM
GTEx:45.6 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:20.1 nTPM
Mouse:33.1 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031121Antibody HPA078401
Glial cells MediumMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Hippocampus
nTPM: 32.2
1898 Male, age 80, left hemisphere 38.7
2529 Female, age 94, left hemisphere 38.3
1911 Female, age 85, right hemisphere 31.5
2621 Female, age 67, right hemisphere 31.4
2148 Female, age 91, left hemisphere 27.6
1855 Male, age 76, left hemisphere 25.9
Dentate gyrus
nTPM: 29.1
2528 Male, age 74, both hemispheres 36.6
2246 Female, age 85, both hemispheres 30.1
2010 Male, age 76, both hemispheres 29.9
1927 Female, age 91, both hemispheres 29.5
2530 Female, age 94, left hemisphere 28.0
2531 Female, age 67, both hemispheres 20.3
Entorhinal gyrus
nTPM: 34.4
2117 Female, age 91, right hemisphere 41.0
2764 Male, age 80, right hemisphere 39.3
1938 Female, age 85, left hemisphere 36.5
1787 Male, age 76, left hemisphere 33.8
2686 Male, age 75, right hemisphere 30.7
2613 Female, age 94, left hemisphere 24.9
Hippocampus, CA1
nTPM: 30.3
2527 Male, age 74, both hemispheres 39.3
2082 Female, age 91, right hemisphere 32.1
2749 Male, age 80, left hemisphere 32.0
1873 Female, age 85, both hemispheres 24.9
2045 Male, age 76, both hemispheres 23.3
Hippocampus, CA2
nTPM: 35.5
2249 Male, age 74, both hemispheres 41.7
2113 Female, age 91, right hemisphere 37.8
1892 Male, age 76, both hemispheres 36.5
1940 Female, age 85, left hemisphere 33.6
2437 Female, age 94, left hemisphere 33.3
1963 Male, age 80, left hemisphere 30.1
Hippocampus, CA3
nTPM: 33.4
2436 Male, age 74, both hemispheres 46.0
1867 Male, age 76, both hemispheres 38.9
1891 Female, age 85, both hemispheres 36.0
2137 Male, age 80, left hemisphere 34.3
2861 Female, age 67, both hemispheres 22.6
2620 Female, age 94, left hemisphere 22.2
Parahippocampal cortex
nTPM: 35.5
2250 Female, age 67, right hemisphere 42.3
1990 Female, age 91, right hemisphere 39.1
1933 Female, age 85, both hemispheres 37.5
1850 Male, age 80, both hemispheres 36.0
2622 Female, age 67, right hemisphere 35.6
2018 Male, age 76, both hemispheres 35.2
2245 Female, age 91, both hemispheres 33.9
2693 Female, age 94, both hemispheres 33.8
2532 Female, age 72, left hemisphere 32.8
2692 Male, age 74, both hemispheres 28.9
Perirhinal gyrus
nTPM: 35.3
1841 Female, age 85, right hemisphere 39.0
1847 Female, age 91, left hemisphere 36.1
2521 Female, age 94, right hemisphere 35.3
1794 Male, age 80, right hemisphere 35.2
2848 Male, age 76, right hemisphere 31.1
Subiculum
nTPM: 37.2
1977 Female, age 85, both hemispheres 38.3
2042 Male, age 76, both hemispheres 38.2
2619 Male, age 74, both hemispheres 37.6
2438 Female, age 94, left hemisphere 36.9
2729 Female, age 91, right hemisphere 36.8
1901 Male, age 80, both hemispheres 35.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.6
Samples: 197

Max nTPM: 85.3
Min nTPM: 18.1
Std nTPM: 10.6
Median nTPM: 46.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 85.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 81.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 78.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 77.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 73.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 72.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 65.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 62.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 62.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 61.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 61.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.4
FF:10153-102I9 76 years, female 52.2
FF:10169-103B7 60 years, female 42.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.1
Pig sample Sample description nTPM
Subiculum
nTPM: 20.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 19.4
Sample A Female 19.6
Sample B Female 21.1
Sample C Male 20.3
Sample D Male 19.4
Dorsal hippocampus
nTPM: 16.9
Samples: 4

Max nTPM: 19.6
Min nTPM: 14.6
Sample A Female 17.1
Sample B Female 14.6
Sample C Male 19.6
Sample D Male 16.2
Entorhinal cortex
nTPM: 16.8
Samples: 4

Max nTPM: 17.8
Min nTPM: 15.8
Sample A Female 17.5
Sample B Female 15.8
Sample C Male 17.8
Sample D Male 16.2
Ventral hippocampus
nTPM: 16.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 15.0
Sample A Female 17.7
Sample B Female 17.5
Sample C Male 17.3
Sample D Male 15.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 33.4
Min nTPM: 28.0
Sample A Male 33.4
Sample B Male 29.7
Sample C Female 28.5
Sample D Female 28.0
Hippocampal formation
nTPM: 33.1
Samples: 4

Max nTPM: 34.5
Min nTPM: 31.1
Sample A Male 32.4
Sample B Male 31.1
Sample C Female 34.5
Sample D Female 34.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
638721 Antisense, RP_040831_02_D10, Mouse strain C57BL/6J (56 days, male) 2.1
75081208 Antisense, RP_060412_01_A01, Mouse strain C57BL/6J (56 days, male) 1.5
Hippocampal formation
Expression energy: 1.8
638721 Antisense, RP_040831_02_D10, Mouse strain C57BL/6J (56 days, male) 2.1
75081208 Antisense, RP_060412_01_A01, Mouse strain C57BL/6J (56 days, male) 1.5

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