HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.4 nTPM
HPA Brain:16.3 nTPM
GTEx:5.4 nTPM
FANTOM5:8.0 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:7.2 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Hippocampus
nTPM: 10.9
1898 Male, age 80, left hemisphere 12.0
2621 Female, age 67, right hemisphere 12.0
2529 Female, age 94, left hemisphere 11.9
1911 Female, age 85, right hemisphere 10.9
2148 Female, age 91, left hemisphere 9.3
1855 Male, age 76, left hemisphere 9.2
Dentate gyrus
nTPM: 10.9
2528 Male, age 74, both hemispheres 15.0
1927 Female, age 91, both hemispheres 12.4
2531 Female, age 67, both hemispheres 11.7
2246 Female, age 85, both hemispheres 9.2
2010 Male, age 76, both hemispheres 9.0
2530 Female, age 94, left hemisphere 7.9
Entorhinal gyrus
nTPM: 15.6
2613 Female, age 94, left hemisphere 22.4
1787 Male, age 76, left hemisphere 15.4
1938 Female, age 85, left hemisphere 15.4
2686 Male, age 75, right hemisphere 15.1
2764 Male, age 80, right hemisphere 14.7
2117 Female, age 91, right hemisphere 10.3
Hippocampus, CA1
nTPM: 14.1
2749 Male, age 80, left hemisphere 22.5
2527 Male, age 74, both hemispheres 15.9
2082 Female, age 91, right hemisphere 11.8
2045 Male, age 76, both hemispheres 11.1
1873 Female, age 85, both hemispheres 9.3
Hippocampus, CA2
nTPM: 13.4
2249 Male, age 74, both hemispheres 16.6
1892 Male, age 76, both hemispheres 13.9
2113 Female, age 91, right hemisphere 13.7
2437 Female, age 94, left hemisphere 13.5
1963 Male, age 80, left hemisphere 11.8
1940 Female, age 85, left hemisphere 10.8
Hippocampus, CA3
nTPM: 12.5
2137 Male, age 80, left hemisphere 18.9
1867 Male, age 76, both hemispheres 12.2
2436 Male, age 74, both hemispheres 11.9
2620 Female, age 94, left hemisphere 11.6
1891 Female, age 85, both hemispheres 10.5
2861 Female, age 67, both hemispheres 9.7
Parahippocampal cortex
nTPM: 15.2
1990 Female, age 91, right hemisphere 18.8
2250 Female, age 67, right hemisphere 17.2
2622 Female, age 67, right hemisphere 16.3
2245 Female, age 91, both hemispheres 15.8
1850 Male, age 80, both hemispheres 15.1
2693 Female, age 94, both hemispheres 15.1
2692 Male, age 74, both hemispheres 14.3
2532 Female, age 72, left hemisphere 13.9
1933 Female, age 85, both hemispheres 13.2
2018 Male, age 76, both hemispheres 11.9
Perirhinal gyrus
nTPM: 16.3
1847 Female, age 91, left hemisphere 22.0
1794 Male, age 80, right hemisphere 15.5
2848 Male, age 76, right hemisphere 15.2
2521 Female, age 94, right hemisphere 14.6
1841 Female, age 85, right hemisphere 14.4
Subiculum
nTPM: 13.4
2438 Female, age 94, left hemisphere 16.4
2619 Male, age 74, both hemispheres 15.3
1901 Male, age 80, both hemispheres 14.9
1977 Female, age 85, both hemispheres 14.8
2729 Female, age 91, right hemisphere 11.2
2042 Male, age 76, both hemispheres 7.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 5.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 5.4
Samples: 197

Max nTPM: 12.7
Min nTPM: 0.4
Std nTPM: 2.3
Median nTPM: 5.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 12.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 11.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 11.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 10.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 10.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 10.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 9.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 9.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 9.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 9.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 9.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 8.0
FF:10153-102I9 76 years, female 10.8
FF:10169-103B7 60 years, female 5.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Subiculum
nTPM: 9.4
Samples: 4

Max nTPM: 13.2
Min nTPM: 7.7
Sample A Female 13.2
Sample B Female 8.3
Sample C Male 8.2
Sample D Male 7.7
Dorsal hippocampus
nTPM: 12.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 4.6
Sample A Female 18.4
Sample B Female 8.4
Sample C Male 17.1
Sample D Male 4.6
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.6
Sample A Female 13.1
Sample B Female 15.1
Sample C Male 11.7
Sample D Male 11.6
Ventral hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 5.6
Sample A Female 10.4
Sample B Female 5.6
Sample C Male 9.2
Sample D Male 8.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.2
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.8
Sample A Male 9.0
Sample B Male 7.0
Sample C Female 5.8
Sample D Female 6.8
Hippocampal formation
nTPM: 5.1
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.9
Sample A Male 4.9
Sample B Male 5.0
Sample C Female 5.1
Sample D Female 5.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
74357546 Antisense, RP_051019_03_D11, Mouse strain C57BL/6J (56 days, male) 2.2
73424271 Antisense, RP_051019_03_D11, Mouse strain C57BL/6J (56 days, male) 0.9

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