MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:30.9 nTPM
GTEx:11.9 nTPM
FANTOM5:87.4 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:10.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
1870 Female, age 42, unknown 31.2
1833 Male, age 53, unknown 30.7
1830 Male, age 51, unknown 29.8
2586 Male, age 75, left hemisphere 28.3
2019 Male, age 18, unknown 28.0
2411 Female, age 72, unknown 27.6
2666 Male, age 74, left hemisphere 26.4
1827 Male, age 72, unknown 25.2
2828 Female, age 72, unknown 24.5
2219 Male, age 76, both hemispheres 22.3
Dorsal raphe nucleus
nTPM: 22.5
2750 Male, age 76, both hemispheres 29.4
2016 Female, age 72, unknown 23.8
1828 Male, age 53, unknown 22.9
2047 Male, age 72, unknown 19.4
2298 Female, age 72, unknown 17.0
Inferior colliculus
nTPM: 22.5
2849 Male, age 72, unknown 23.5
1848 Female, age 42, unknown 23.3
1890 Male, age 53, unknown 23.2
2097 Female, age 72, unknown 20.0
Median raphe nucleus
nTPM: 21.7
2220 Male, age 76, midline 21.7
Periaquaductal grey, anterior
nTPM: 20.8
2502 Female, age 75, unknown 22.9
1947 Male, age 18, unknown 21.0
1795 Male, age 51, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 21.5
2464 Female, age 72, unknown 22.9
1831 Male, age 72, unknown 22.5
1840 Male, age 53, unknown 20.9
2850 Male, age 76, both hemispheres 19.6
Periaquaductal grey, lateral
nTPM: 20.0
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 19.2
2272 Male, age 74, both hemispheres 18.6
Pretectal area
nTPM: 22.6
1817 Female, age 42, unknown 26.0
2316 Male, age 76, right hemisphere 25.6
2407 Male, age 75, both hemispheres 25.5
1815 Male, age 53, unknown 25.3
2007 Male, age 72, unknown 24.1
2825 Male, age 18, unknown 23.3
1816 Male, age 51, unknown 22.2
2273 Male, age 74, both hemispheres 20.3
2667 Female, age 75, unknown 20.2
2224 Female, age 72, unknown 18.7
1944 Female, age 72, unknown 17.8
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 35.1
2503 Female, age 72, unknown 33.4
1904 Male, age 53, unknown 33.1
1865 Male, age 51, unknown 32.9
2588 Male, age 74, left hemisphere 32.1
2769 Male, age 72, unknown 31.7
2823 Male, age 76, right hemisphere 31.1
1954 Female, age 42, unknown 30.4
2785 Male, age 18, unknown 30.3
2227 Male, age 72, unknown 28.4
2725 Female, age 75, unknown 27.3
2584 Male, age 75, left hemisphere 25.6
Substantia nigra
nTPM: 24.2
2590 Female, age 75, unknown 27.5
2583 Male, age 75, right hemisphere 27.3
2409 Female, age 72, unknown 26.3
1889 Female, age 72, unknown 25.4
1851 Male, age 51, unknown 24.1
2699 Male, age 18, unknown 23.7
2241 Male, age 72, unknown 22.5
2665 Male, age 74, both hemispheres 22.0
1916 Female, age 42, unknown 21.8
1941 Male, age 53, unknown 21.0
Superior colliculus
nTPM: 24.7
1913 Female, age 42, unknown 32.9
1995 Male, age 72, unknown 28.8
1895 Male, age 76, right hemisphere 28.3
1839 Male, age 51, unknown 25.6
2587 Male, age 74, left hemisphere 24.7
2668 Female, age 75, unknown 24.2
2664 Male, age 75, both hemispheres 21.7
1796 Male, age 53, unknown 21.4
2261 Male, age 18, unknown 20.8
2087 Female, age 72, unknown 18.2
Ventral tegmental area
nTPM: 23.9
2223 Female, age 72, unknown 27.5
2410 Female, age 72, unknown 26.6
2218 Male, age 76, both hemispheres 24.6
1942 Male, age 51, unknown 21.8
2021 Male, age 53, unknown 21.7
1915 Female, age 42, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 26.3
Min nTPM: 5.3
Std nTPM: 4.2
Median nTPM: 10.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 26.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 24.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 22.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 22.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 20.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 20.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 19.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 19.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.4
FF:10158-103A5 76 years, female 87.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 34.2
Min nTPM: 24.8
Sample A Female 24.8
Sample B Female 25.2
Sample C Male 29.1
Sample D Male 34.2
Midbrain
nTPM: 28.9
Samples: 4

Max nTPM: 34.3
Min nTPM: 24.5
Sample A Female 34.3
Sample B Female 25.8
Sample C Male 30.8
Sample D Male 24.5
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 24.8
Min nTPM: 23.5
Sample B Female 24.8
Sample C Male 23.6
Sample D Male 23.5
Superior colliculi
nTPM: 25.9
Samples: 4

Max nTPM: 30.2
Min nTPM: 21.1
Sample A Female 23.3
Sample B Female 21.1
Sample C Male 30.2
Sample D Male 28.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.3
Sample A Male 8.3
Sample B Male 10.8
Sample C Female 12.1
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74988272 Antisense, RP_060315_05_C05, Mouse strain C57BL/6J (56 days, male) 0.7
79394338 Antisense, RP_071018_03_C11, Mouse strain C57BL/6J (56 days, male) 0.4

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