MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.5 nTPM
HPA Brain:32.7 nTPM
GTEx:81.5 nTPM
FANTOM5:58.8 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:18.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
1870 Female, age 42, unknown 36.5
2586 Male, age 75, left hemisphere 33.7
2828 Female, age 72, unknown 30.6
1833 Male, age 53, unknown 27.9
2411 Female, age 72, unknown 26.9
2019 Male, age 18, unknown 26.1
1827 Male, age 72, unknown 25.7
1830 Male, age 51, unknown 23.9
2666 Male, age 74, left hemisphere 18.6
2219 Male, age 76, both hemispheres 18.0
Dorsal raphe nucleus
nTPM: 29.6
2016 Female, age 72, unknown 31.9
2298 Female, age 72, unknown 30.4
1828 Male, age 53, unknown 29.9
2047 Male, age 72, unknown 28.5
2750 Male, age 76, both hemispheres 27.1
Inferior colliculus
nTPM: 32.7
2097 Female, age 72, unknown 37.7
1848 Female, age 42, unknown 33.7
2849 Male, age 72, unknown 30.1
1890 Male, age 53, unknown 29.5
Median raphe nucleus
nTPM: 18.6
2220 Male, age 76, midline 18.6
Periaquaductal grey, anterior
nTPM: 26.9
2502 Female, age 75, unknown 33.7
1795 Male, age 51, unknown 25.8
1947 Male, age 18, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 28.6
1840 Male, age 53, unknown 31.9
2464 Female, age 72, unknown 30.5
2850 Male, age 76, both hemispheres 27.4
1831 Male, age 72, unknown 24.9
Periaquaductal grey, lateral
nTPM: 25.6
2140 Male, age 76, both hemispheres 31.0
2053 Male, age 18, unknown 28.3
2272 Male, age 74, both hemispheres 17.5
Pretectal area
nTPM: 28.4
1817 Female, age 42, unknown 33.0
1816 Male, age 51, unknown 31.4
2667 Female, age 75, unknown 30.8
2273 Male, age 74, both hemispheres 29.3
2825 Male, age 18, unknown 29.3
1944 Female, age 72, unknown 28.4
1815 Male, age 53, unknown 28.3
2224 Female, age 72, unknown 28.2
2316 Male, age 76, right hemisphere 27.8
2007 Male, age 72, unknown 24.0
2407 Male, age 75, both hemispheres 21.9
Red nucleus
nTPM: 31.8
1821 Female, age 72, unknown 45.0
2503 Female, age 72, unknown 38.0
2769 Male, age 72, unknown 35.1
1904 Male, age 53, unknown 34.6
2227 Male, age 72, unknown 34.5
2823 Male, age 76, right hemisphere 33.9
1865 Male, age 51, unknown 33.7
1954 Female, age 42, unknown 33.6
2725 Female, age 75, unknown 27.3
2785 Male, age 18, unknown 27.0
2584 Male, age 75, left hemisphere 19.4
2588 Male, age 74, left hemisphere 19.2
Substantia nigra
nTPM: 32.7
2699 Male, age 18, unknown 38.5
1851 Male, age 51, unknown 35.9
2241 Male, age 72, unknown 35.4
1889 Female, age 72, unknown 33.1
2583 Male, age 75, right hemisphere 32.5
2665 Male, age 74, both hemispheres 32.5
1916 Female, age 42, unknown 31.8
2409 Female, age 72, unknown 31.0
2590 Female, age 75, unknown 29.4
1941 Male, age 53, unknown 26.8
Superior colliculus
nTPM: 28.9
1913 Female, age 42, unknown 33.4
1995 Male, age 72, unknown 32.3
2087 Female, age 72, unknown 31.4
2261 Male, age 18, unknown 29.3
1796 Male, age 53, unknown 29.2
1839 Male, age 51, unknown 28.3
2664 Male, age 75, both hemispheres 27.9
2668 Female, age 75, unknown 26.0
1895 Male, age 76, right hemisphere 25.9
2587 Male, age 74, left hemisphere 25.2
Ventral tegmental area
nTPM: 29.8
2410 Female, age 72, unknown 34.1
2223 Female, age 72, unknown 33.4
1915 Female, age 42, unknown 33.1
2021 Male, age 53, unknown 28.9
1942 Male, age 51, unknown 25.3
2218 Male, age 76, both hemispheres 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.5
Samples: 139

Max nTPM: 228.0
Min nTPM: 23.1
Std nTPM: 33.5
Median nTPM: 74.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 228.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 227.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 201.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 183.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 180.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 158.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 143.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 141.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 137.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 124.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.8
FF:10158-103A5 76 years, female 58.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 27.4
Sample A Female 39.9
Sample B Female 34.6
Sample C Male 27.4
Sample D Male 35.2
Midbrain
nTPM: 37.3
Samples: 4

Max nTPM: 69.7
Min nTPM: 21.3
Sample A Female 69.7
Sample B Female 34.3
Sample C Male 24.0
Sample D Male 21.3
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 33.7
Min nTPM: 29.5
Sample B Female 32.7
Sample C Male 33.7
Sample D Male 29.5
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 26.7
Sample A Female 35.8
Sample B Female 30.7
Sample C Male 26.7
Sample D Male 28.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 21.7
Min nTPM: 15.9
Sample A Male 21.7
Sample B Male 15.9
Sample C Female 16.5
Sample D Female 21.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
76097729 Antisense, RP_060626_01_E01, Mouse strain C57BL/6J (56 days, male) 0.4

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