MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:149.2 nTPM
HPA Brain:107.8 nTPM
GTEx:149.2 nTPM
FANTOM5:155.6 Scaled Tags Per Million
Pig:88.1 nTPM
Mouse:80.7 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.0
2666 Male, age 74, left hemisphere 124.9
1833 Male, age 53, unknown 114.9
1827 Male, age 72, unknown 113.9
1830 Male, age 51, unknown 111.3
2586 Male, age 75, left hemisphere 110.7
1870 Female, age 42, unknown 102.6
2828 Female, age 72, unknown 102.4
2219 Male, age 76, both hemispheres 101.0
2019 Male, age 18, unknown 100.8
2411 Female, age 72, unknown 87.9
Dorsal raphe nucleus
nTPM: 91.7
1828 Male, age 53, unknown 101.8
2750 Male, age 76, both hemispheres 98.4
2016 Female, age 72, unknown 95.9
2047 Male, age 72, unknown 82.0
2298 Female, age 72, unknown 80.3
Inferior colliculus
nTPM: 98.8
2849 Male, age 72, unknown 116.3
1890 Male, age 53, unknown 98.2
2097 Female, age 72, unknown 92.1
1848 Female, age 42, unknown 88.7
Median raphe nucleus
nTPM: 100.4
2220 Male, age 76, midline 100.4
Periaquaductal grey, anterior
nTPM: 94.1
1947 Male, age 18, unknown 98.9
1795 Male, age 51, unknown 92.2
2502 Female, age 75, unknown 91.2
Periaquaductal grey, dorsal
nTPM: 103.3
2850 Male, age 76, both hemispheres 113.6
1831 Male, age 72, unknown 109.8
2464 Female, age 72, unknown 98.2
1840 Male, age 53, unknown 91.7
Periaquaductal grey, lateral
nTPM: 99.0
2140 Male, age 76, both hemispheres 106.4
2272 Male, age 74, both hemispheres 101.2
2053 Male, age 18, unknown 89.4
Pretectal area
nTPM: 102.7
1815 Male, age 53, unknown 118.3
2407 Male, age 75, both hemispheres 117.7
2316 Male, age 76, right hemisphere 108.7
2667 Female, age 75, unknown 107.8
2825 Male, age 18, unknown 107.2
1816 Male, age 51, unknown 106.4
1817 Female, age 42, unknown 98.4
2273 Male, age 74, both hemispheres 94.0
2007 Male, age 72, unknown 93.0
2224 Female, age 72, unknown 89.5
1944 Female, age 72, unknown 89.0
Red nucleus
nTPM: 107.8
2823 Male, age 76, right hemisphere 119.7
2584 Male, age 75, left hemisphere 119.3
2588 Male, age 74, left hemisphere 118.5
2725 Female, age 75, unknown 116.2
2769 Male, age 72, unknown 110.9
2227 Male, age 72, unknown 106.6
1821 Female, age 72, unknown 103.7
2503 Female, age 72, unknown 103.4
1865 Male, age 51, unknown 102.5
1904 Male, age 53, unknown 101.8
1954 Female, age 42, unknown 96.7
2785 Male, age 18, unknown 94.2
Substantia nigra
nTPM: 103.7
2699 Male, age 18, unknown 126.7
2665 Male, age 74, both hemispheres 121.7
1916 Female, age 42, unknown 111.8
1851 Male, age 51, unknown 102.9
2583 Male, age 75, right hemisphere 102.6
1941 Male, age 53, unknown 97.4
2590 Female, age 75, unknown 97.2
2409 Female, age 72, unknown 93.7
1889 Female, age 72, unknown 91.4
2241 Male, age 72, unknown 91.4
Superior colliculus
nTPM: 102.1
2664 Male, age 75, both hemispheres 125.7
1913 Female, age 42, unknown 113.6
1839 Male, age 51, unknown 106.1
1895 Male, age 76, right hemisphere 103.0
1995 Male, age 72, unknown 101.5
2261 Male, age 18, unknown 99.7
2668 Female, age 75, unknown 97.4
2087 Female, age 72, unknown 96.8
1796 Male, age 53, unknown 88.4
2587 Male, age 74, left hemisphere 88.4
Ventral tegmental area
nTPM: 95.6
1915 Female, age 42, unknown 102.3
2218 Male, age 76, both hemispheres 101.7
2021 Male, age 53, unknown 98.8
2223 Female, age 72, unknown 98.3
1942 Male, age 51, unknown 89.9
2410 Female, age 72, unknown 82.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 149.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 149.2
Samples: 139

Max nTPM: 241.6
Min nTPM: 82.2
Std nTPM: 28.3
Median nTPM: 145.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 241.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 229.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 227.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 211.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 205.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 205.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 201.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 198.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 194.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 191.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 191.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 155.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 155.6
FF:10158-103A5 76 years, female 155.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.2
Samples: 4

Max nTPM: 101.6
Min nTPM: 78.9
Sample A Female 78.9
Sample B Female 83.1
Sample C Male 89.0
Sample D Male 101.6
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 90.4
Min nTPM: 68.3
Sample A Female 72.4
Sample B Female 86.4
Sample C Male 68.3
Sample D Male 90.4
Periaqueductal gray
nTPM: 79.1
Samples: 3

Max nTPM: 79.8
Min nTPM: 78.5
Sample B Female 78.9
Sample C Male 78.5
Sample D Male 79.8
Superior colliculi
nTPM: 79.2
Samples: 4

Max nTPM: 92.0
Min nTPM: 70.3
Sample A Female 80.3
Sample B Female 70.3
Sample C Male 74.1
Sample D Male 92.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.7
Samples: 4

Max nTPM: 91.5
Min nTPM: 73.9
Sample A Male 91.5
Sample B Male 81.3
Sample C Female 76.0
Sample D Female 73.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74431266 Antisense, RP_060207_01_F12, Mouse strain C57BL/6J (56 days, male) 12.0
70919579 Antisense, RP_050713_01_F03, Mouse strain C57BL/6J (56 days, male) 2.1

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