MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.3 nTPM
HPA Brain:50.3 nTPM
GTEx:64.3 nTPM
FANTOM5:172.6 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:13.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2666 Male, age 74, left hemisphere 49.1
1870 Female, age 42, unknown 48.9
2828 Female, age 72, unknown 48.6
2019 Male, age 18, unknown 45.5
1830 Male, age 51, unknown 45.3
1827 Male, age 72, unknown 43.3
2411 Female, age 72, unknown 39.8
1833 Male, age 53, unknown 39.7
2586 Male, age 75, left hemisphere 33.6
2219 Male, age 76, both hemispheres 23.4
Dorsal raphe nucleus
nTPM: 41.7
2016 Female, age 72, unknown 47.5
2298 Female, age 72, unknown 42.4
2750 Male, age 76, both hemispheres 42.2
1828 Male, age 53, unknown 41.1
2047 Male, age 72, unknown 35.2
Inferior colliculus
nTPM: 46.7
2097 Female, age 72, unknown 49.4
1890 Male, age 53, unknown 48.9
1848 Female, age 42, unknown 45.4
2849 Male, age 72, unknown 43.2
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Periaquaductal grey, anterior
nTPM: 50.3
2502 Female, age 75, unknown 54.7
1947 Male, age 18, unknown 50.1
1795 Male, age 51, unknown 46.0
Periaquaductal grey, dorsal
nTPM: 45.9
2850 Male, age 76, both hemispheres 63.1
1831 Male, age 72, unknown 43.1
2464 Female, age 72, unknown 41.1
1840 Male, age 53, unknown 36.4
Periaquaductal grey, lateral
nTPM: 48.6
2140 Male, age 76, both hemispheres 58.3
2053 Male, age 18, unknown 49.5
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 42.2
2316 Male, age 76, right hemisphere 47.0
2007 Male, age 72, unknown 46.4
1817 Female, age 42, unknown 45.8
2667 Female, age 75, unknown 44.9
1944 Female, age 72, unknown 44.2
1816 Male, age 51, unknown 41.9
2224 Female, age 72, unknown 41.2
2407 Male, age 75, both hemispheres 39.6
1815 Male, age 53, unknown 39.5
2273 Male, age 74, both hemispheres 37.7
2825 Male, age 18, unknown 36.1
Red nucleus
nTPM: 48.3
1954 Female, age 42, unknown 58.8
2503 Female, age 72, unknown 55.2
1865 Male, age 51, unknown 51.9
1904 Male, age 53, unknown 51.5
2227 Male, age 72, unknown 49.3
2769 Male, age 72, unknown 48.6
1821 Female, age 72, unknown 48.3
2725 Female, age 75, unknown 45.8
2823 Male, age 76, right hemisphere 45.0
2785 Male, age 18, unknown 44.0
2588 Male, age 74, left hemisphere 43.1
2584 Male, age 75, left hemisphere 37.7
Substantia nigra
nTPM: 42.6
2665 Male, age 74, both hemispheres 54.7
1889 Female, age 72, unknown 46.7
2409 Female, age 72, unknown 46.5
1851 Male, age 51, unknown 45.0
2699 Male, age 18, unknown 42.6
1916 Female, age 42, unknown 41.7
2241 Male, age 72, unknown 40.9
2590 Female, age 75, unknown 38.3
1941 Male, age 53, unknown 35.2
2583 Male, age 75, right hemisphere 34.6
Superior colliculus
nTPM: 43.6
1913 Female, age 42, unknown 53.7
1796 Male, age 53, unknown 53.6
1995 Male, age 72, unknown 48.6
2261 Male, age 18, unknown 47.4
2668 Female, age 75, unknown 42.7
2087 Female, age 72, unknown 40.1
1895 Male, age 76, right hemisphere 40.0
2587 Male, age 74, left hemisphere 39.7
1839 Male, age 51, unknown 38.7
2664 Male, age 75, both hemispheres 31.9
Ventral tegmental area
nTPM: 44.6
2021 Male, age 53, unknown 51.9
1915 Female, age 42, unknown 45.6
2218 Male, age 76, both hemispheres 44.1
2410 Female, age 72, unknown 43.7
1942 Male, age 51, unknown 42.4
2223 Female, age 72, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.3
Samples: 139

Max nTPM: 207.3
Min nTPM: 21.2
Std nTPM: 29.0
Median nTPM: 59.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 207.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 178.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 146.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 145.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 137.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 129.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 119.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 108.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 107.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 102.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 99.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.6
FF:10158-103A5 76 years, female 172.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 47.8
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 47.8
Sample C Male 25.6
Sample D Male 32.8
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 30.6
Min nTPM: 22.6
Sample A Female 29.4
Sample B Female 30.6
Sample C Male 26.0
Sample D Male 22.6
Periaqueductal gray
nTPM: 27.5
Samples: 3

Max nTPM: 29.7
Min nTPM: 25.0
Sample B Female 29.7
Sample C Male 27.7
Sample D Male 25.0
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 42.8
Min nTPM: 28.1
Sample A Female 30.1
Sample B Female 42.8
Sample C Male 28.8
Sample D Male 28.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 18.9
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 13.6
Sample C Female 12.5
Sample D Female 18.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69782222 Antisense, RP_050505_02_E10, Mouse strain C57BL/6J (56 days, male) 0.8

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