MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:92.8 nTPM
GTEx:38.5 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:128.5 nTPM
Allen mouse:15.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.4
2586 Male, age 75, left hemisphere 119.2
1827 Male, age 72, unknown 98.0
2666 Male, age 74, left hemisphere 83.2
2411 Female, age 72, unknown 80.0
2219 Male, age 76, both hemispheres 79.4
2828 Female, age 72, unknown 79.1
2019 Male, age 18, unknown 73.8
1870 Female, age 42, unknown 67.0
1833 Male, age 53, unknown 63.3
1830 Male, age 51, unknown 61.3
Dorsal raphe nucleus
nTPM: 75.2
2298 Female, age 72, unknown 92.9
2047 Male, age 72, unknown 83.3
2750 Male, age 76, both hemispheres 71.7
1828 Male, age 53, unknown 70.6
2016 Female, age 72, unknown 57.4
Inferior colliculus
nTPM: 74.7
2097 Female, age 72, unknown 86.0
2849 Male, age 72, unknown 73.3
1848 Female, age 42, unknown 71.0
1890 Male, age 53, unknown 68.5
Median raphe nucleus
nTPM: 86.5
2220 Male, age 76, midline 86.5
Periaquaductal grey, anterior
nTPM: 92.8
1795 Male, age 51, unknown 96.0
2502 Female, age 75, unknown 94.9
1947 Male, age 18, unknown 87.5
Periaquaductal grey, dorsal
nTPM: 70.4
1840 Male, age 53, unknown 87.2
2464 Female, age 72, unknown 70.6
1831 Male, age 72, unknown 64.7
2850 Male, age 76, both hemispheres 59.0
Periaquaductal grey, lateral
nTPM: 59.1
2053 Male, age 18, unknown 63.8
2140 Male, age 76, both hemispheres 63.7
2272 Male, age 74, both hemispheres 50.0
Pretectal area
nTPM: 82.2
1816 Male, age 51, unknown 112.5
2007 Male, age 72, unknown 109.5
1944 Female, age 72, unknown 106.0
1817 Female, age 42, unknown 97.5
1815 Male, age 53, unknown 85.7
2224 Female, age 72, unknown 79.6
2825 Male, age 18, unknown 76.4
2667 Female, age 75, unknown 69.4
2407 Male, age 75, both hemispheres 63.5
2316 Male, age 76, right hemisphere 55.9
2273 Male, age 74, both hemispheres 48.4
Red nucleus
nTPM: 60.3
2584 Male, age 75, left hemisphere 89.6
2785 Male, age 18, unknown 72.5
2588 Male, age 74, left hemisphere 66.9
1821 Female, age 72, unknown 63.5
2725 Female, age 75, unknown 60.1
1954 Female, age 42, unknown 59.7
2503 Female, age 72, unknown 56.6
2769 Male, age 72, unknown 55.0
2227 Male, age 72, unknown 54.7
1904 Male, age 53, unknown 51.9
1865 Male, age 51, unknown 47.3
2823 Male, age 76, right hemisphere 46.2
Substantia nigra
nTPM: 89.0
1916 Female, age 42, unknown 125.0
2665 Male, age 74, both hemispheres 105.0
1941 Male, age 53, unknown 101.8
1851 Male, age 51, unknown 99.3
1889 Female, age 72, unknown 93.7
2241 Male, age 72, unknown 85.2
2583 Male, age 75, right hemisphere 80.7
2590 Female, age 75, unknown 71.3
2699 Male, age 18, unknown 67.8
2409 Female, age 72, unknown 60.4
Superior colliculus
nTPM: 77.5
2668 Female, age 75, unknown 101.7
2664 Male, age 75, both hemispheres 97.0
2087 Female, age 72, unknown 92.9
1796 Male, age 53, unknown 89.2
2261 Male, age 18, unknown 86.4
1839 Male, age 51, unknown 73.3
1895 Male, age 76, right hemisphere 69.9
2587 Male, age 74, left hemisphere 59.9
1913 Female, age 42, unknown 53.7
1995 Male, age 72, unknown 51.2
Ventral tegmental area
nTPM: 82.3
2410 Female, age 72, unknown 94.9
1915 Female, age 42, unknown 94.0
2218 Male, age 76, both hemispheres 91.9
1942 Male, age 51, unknown 80.7
2021 Male, age 53, unknown 70.8
2223 Female, age 72, unknown 61.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 107.4
Min nTPM: 15.7
Std nTPM: 16.1
Median nTPM: 35.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 107.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 99.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 80.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 72.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 72.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 70.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 66.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 62.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.6
FF:10158-103A5 76 years, female 52.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 48.1
Min nTPM: 19.4
Sample A Female 48.1
Sample B Female 28.0
Sample C Male 46.0
Sample D Male 19.4
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 73.0
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 31.3
Sample C Male 73.0
Sample D Male 54.4
Periaqueductal gray
nTPM: 31.8
Samples: 3

Max nTPM: 39.9
Min nTPM: 25.5
Sample B Female 30.1
Sample C Male 39.9
Sample D Male 25.5
Superior colliculi
nTPM: 49.4
Samples: 4

Max nTPM: 64.4
Min nTPM: 33.2
Sample A Female 50.6
Sample B Female 33.2
Sample C Male 64.4
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.5
Samples: 4

Max nTPM: 140.8
Min nTPM: 114.3
Sample A Male 114.3
Sample B Male 130.6
Sample C Female 140.8
Sample D Female 128.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.3
68795442 Antisense, RP_041130_01_E06, Mouse strain C57BL/6J (56 days, male) 15.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org