MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.1 nTPM
HPA Brain:54.7 nTPM
GTEx:35.1 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:38.1 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
2411 Female, age 72, unknown 55.1
2586 Male, age 75, left hemisphere 52.2
1827 Male, age 72, unknown 51.9
1870 Female, age 42, unknown 51.9
1833 Male, age 53, unknown 51.8
2219 Male, age 76, both hemispheres 51.8
1830 Male, age 51, unknown 50.9
2828 Female, age 72, unknown 49.4
2019 Male, age 18, unknown 48.6
2666 Male, age 74, left hemisphere 44.6
Dorsal raphe nucleus
nTPM: 50.4
2298 Female, age 72, unknown 53.3
2750 Male, age 76, both hemispheres 52.0
2047 Male, age 72, unknown 49.9
2016 Female, age 72, unknown 48.5
1828 Male, age 53, unknown 48.3
Inferior colliculus
nTPM: 46.2
2849 Male, age 72, unknown 48.9
1848 Female, age 42, unknown 46.9
1890 Male, age 53, unknown 45.2
2097 Female, age 72, unknown 43.8
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Periaquaductal grey, anterior
nTPM: 49.8
1947 Male, age 18, unknown 52.3
2502 Female, age 75, unknown 49.3
1795 Male, age 51, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 49.1
2464 Female, age 72, unknown 47.6
2850 Male, age 76, both hemispheres 47.6
1831 Male, age 72, unknown 45.0
Periaquaductal grey, lateral
nTPM: 50.3
2140 Male, age 76, both hemispheres 53.6
2272 Male, age 74, both hemispheres 52.7
2053 Male, age 18, unknown 44.5
Pretectal area
nTPM: 49.8
2667 Female, age 75, unknown 57.4
2316 Male, age 76, right hemisphere 52.9
2825 Male, age 18, unknown 51.6
2273 Male, age 74, both hemispheres 50.8
2007 Male, age 72, unknown 50.1
1817 Female, age 42, unknown 49.0
1815 Male, age 53, unknown 48.5
2224 Female, age 72, unknown 48.0
2407 Male, age 75, both hemispheres 47.3
1816 Male, age 51, unknown 46.4
1944 Female, age 72, unknown 45.5
Red nucleus
nTPM: 51.6
2503 Female, age 72, unknown 55.4
1865 Male, age 51, unknown 53.5
1821 Female, age 72, unknown 53.2
1904 Male, age 53, unknown 53.0
2588 Male, age 74, left hemisphere 52.5
2769 Male, age 72, unknown 51.8
2227 Male, age 72, unknown 51.2
2725 Female, age 75, unknown 51.1
2584 Male, age 75, left hemisphere 50.2
2785 Male, age 18, unknown 49.8
2823 Male, age 76, right hemisphere 48.8
1954 Female, age 42, unknown 48.7
Substantia nigra
nTPM: 49.0
1916 Female, age 42, unknown 54.6
2699 Male, age 18, unknown 53.6
1851 Male, age 51, unknown 52.3
2409 Female, age 72, unknown 49.8
2590 Female, age 75, unknown 49.6
1941 Male, age 53, unknown 48.3
1889 Female, age 72, unknown 47.9
2241 Male, age 72, unknown 44.8
2583 Male, age 75, right hemisphere 44.8
2665 Male, age 74, both hemispheres 44.0
Superior colliculus
nTPM: 47.7
1913 Female, age 42, unknown 52.5
1796 Male, age 53, unknown 50.9
1995 Male, age 72, unknown 50.6
1839 Male, age 51, unknown 48.4
2261 Male, age 18, unknown 48.3
1895 Male, age 76, right hemisphere 47.7
2587 Male, age 74, left hemisphere 46.8
2087 Female, age 72, unknown 45.6
2664 Male, age 75, both hemispheres 45.1
2668 Female, age 75, unknown 41.3
Ventral tegmental area
nTPM: 49.0
2223 Female, age 72, unknown 50.4
2410 Female, age 72, unknown 50.2
1915 Female, age 42, unknown 49.5
2218 Male, age 76, both hemispheres 49.3
1942 Male, age 51, unknown 48.2
2021 Male, age 53, unknown 46.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.1
Samples: 139

Max nTPM: 61.5
Min nTPM: 23.0
Std nTPM: 6.3
Median nTPM: 33.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 51.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 47.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 46.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.1
FF:10158-103A5 76 years, female 111.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 27.3
Min nTPM: 23.5
Sample A Female 27.2
Sample B Female 23.5
Sample C Male 27.3
Sample D Male 24.5
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 31.8
Min nTPM: 22.5
Sample A Female 31.8
Sample B Female 22.5
Sample C Male 28.5
Sample D Male 24.1
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 24.0
Min nTPM: 19.9
Sample B Female 22.3
Sample C Male 24.0
Sample D Male 19.9
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 30.7
Min nTPM: 27.1
Sample A Female 27.5
Sample B Female 30.3
Sample C Male 30.7
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 40.8
Min nTPM: 36.2
Sample A Male 37.1
Sample B Male 36.2
Sample C Female 40.8
Sample D Female 38.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
67850946 Antisense, RP_041018_01_A05, Mouse strain C57BL/6J (56 days, male) 6.1
119683 Antisense, RP_040507_01_B10, Mouse strain C57BL/6J (56 days, male) 3.0

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