HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:35.3 nTPM
HPA Brain:31.1 nTPM
GTEx:35.3 nTPM
FANTOM5:23.0 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:1.1 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055223Antibody HPA076419
Glial cells LowNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.1
Sample id Sample description nTPM
Hippocampus
nTPM: 25.5
2529 Female, age 94, left hemisphere 28.5
1898 Male, age 80, left hemisphere 27.4
1911 Female, age 85, right hemisphere 26.0
2148 Female, age 91, left hemisphere 25.0
2621 Female, age 67, right hemisphere 24.8
1855 Male, age 76, left hemisphere 21.1
Dentate gyrus
nTPM: 25.5
2530 Female, age 94, left hemisphere 43.6
2010 Male, age 76, both hemispheres 25.9
2531 Female, age 67, both hemispheres 25.5
2528 Male, age 74, both hemispheres 20.5
2246 Female, age 85, both hemispheres 20.2
1927 Female, age 91, both hemispheres 17.2
Entorhinal gyrus
nTPM: 29.0
2117 Female, age 91, right hemisphere 38.5
2686 Male, age 75, right hemisphere 35.8
2764 Male, age 80, right hemisphere 32.6
2613 Female, age 94, left hemisphere 23.8
1938 Female, age 85, left hemisphere 22.6
1787 Male, age 76, left hemisphere 20.5
Hippocampus, CA1
nTPM: 19.8
1873 Female, age 85, both hemispheres 23.1
2527 Male, age 74, both hemispheres 20.6
2082 Female, age 91, right hemisphere 19.7
2749 Male, age 80, left hemisphere 18.4
2045 Male, age 76, both hemispheres 17.1
Hippocampus, CA2
nTPM: 24.7
1963 Male, age 80, left hemisphere 30.2
2437 Female, age 94, left hemisphere 27.3
1940 Female, age 85, left hemisphere 26.0
2249 Male, age 74, both hemispheres 24.3
2113 Female, age 91, right hemisphere 22.0
1892 Male, age 76, both hemispheres 18.4
Hippocampus, CA3
nTPM: 19.6
1891 Female, age 85, both hemispheres 29.5
2861 Female, age 67, both hemispheres 22.1
1867 Male, age 76, both hemispheres 19.7
2620 Female, age 94, left hemisphere 16.4
2436 Male, age 74, both hemispheres 15.8
2137 Male, age 80, left hemisphere 14.0
Parahippocampal cortex
nTPM: 24.6
2532 Female, age 72, left hemisphere 31.8
1990 Female, age 91, right hemisphere 27.4
2018 Male, age 76, both hemispheres 27.2
2692 Male, age 74, both hemispheres 26.5
2622 Female, age 67, right hemisphere 25.4
1850 Male, age 80, both hemispheres 24.8
1933 Female, age 85, both hemispheres 24.8
2245 Female, age 91, both hemispheres 23.2
2693 Female, age 94, both hemispheres 17.3
2250 Female, age 67, right hemisphere 17.2
Perirhinal gyrus
nTPM: 20.0
1794 Male, age 80, right hemisphere 22.5
2848 Male, age 76, right hemisphere 22.0
1841 Female, age 85, right hemisphere 20.2
1847 Female, age 91, left hemisphere 19.3
2521 Female, age 94, right hemisphere 16.1
Subiculum
nTPM: 31.1
2042 Male, age 76, both hemispheres 35.0
1901 Male, age 80, both hemispheres 34.1
2438 Female, age 94, left hemisphere 34.0
1977 Female, age 85, both hemispheres 31.2
2729 Female, age 91, right hemisphere 27.9
2619 Male, age 74, both hemispheres 24.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.3
Samples: 197

Max nTPM: 173.6
Min nTPM: 4.4
Std nTPM: 19.6
Median nTPM: 30.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 173.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 112.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 100.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 97.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 87.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 74.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 73.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 73.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 71.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 68.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 67.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.0
FF:10169-103B7 60 years, female 27.0
FF:10153-102I9 76 years, female 19.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Subiculum
nTPM: 21.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.0
Sample A Female 24.2
Sample B Female 21.8
Sample C Male 20.1
Sample D Male 19.0
Dorsal hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 18.7
Min nTPM: 11.7
Sample A Female 18.7
Sample B Female 16.8
Sample C Male 15.7
Sample D Male 11.7
Entorhinal cortex
nTPM: 17.7
Samples: 4

Max nTPM: 23.1
Min nTPM: 13.3
Sample A Female 16.3
Sample B Female 18.0
Sample C Male 23.1
Sample D Male 13.3
Ventral hippocampus
nTPM: 19.2
Samples: 4

Max nTPM: 24.7
Min nTPM: 16.9
Sample A Female 18.1
Sample B Female 16.9
Sample C Male 24.7
Sample D Male 17.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.1
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.7
Sample A Male 1.1
Sample B Male 1.0
Sample C Female 0.7
Sample D Female 1.6
Hippocampal formation
nTPM: 0.2
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.6
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71381121 Antisense, RP_050510_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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