MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA Brain:23.7 nTPM
GTEx:12.7 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:61.2 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2586 Male, age 75, left hemisphere 34.3
1827 Male, age 72, unknown 24.3
2828 Female, age 72, unknown 23.3
2666 Male, age 74, left hemisphere 23.2
2411 Female, age 72, unknown 22.4
2019 Male, age 18, unknown 21.8
1830 Male, age 51, unknown 21.7
1870 Female, age 42, unknown 21.6
1833 Male, age 53, unknown 20.8
2219 Male, age 76, both hemispheres 20.1
Dorsal raphe nucleus
nTPM: 21.0
2016 Female, age 72, unknown 22.6
2047 Male, age 72, unknown 22.2
1828 Male, age 53, unknown 22.1
2298 Female, age 72, unknown 20.1
2750 Male, age 76, both hemispheres 17.9
Inferior colliculus
nTPM: 22.1
2097 Female, age 72, unknown 23.4
1890 Male, age 53, unknown 22.6
1848 Female, age 42, unknown 21.9
2849 Male, age 72, unknown 20.7
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 23.7
2502 Female, age 75, unknown 27.8
1795 Male, age 51, unknown 21.7
1947 Male, age 18, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 21.9
1840 Male, age 53, unknown 25.2
2464 Female, age 72, unknown 22.4
1831 Male, age 72, unknown 21.0
2850 Male, age 76, both hemispheres 19.1
Periaquaductal grey, lateral
nTPM: 20.5
2053 Male, age 18, unknown 22.8
2140 Male, age 76, both hemispheres 20.5
2272 Male, age 74, both hemispheres 18.1
Pretectal area
nTPM: 21.8
2407 Male, age 75, both hemispheres 24.4
1816 Male, age 51, unknown 23.9
2007 Male, age 72, unknown 23.4
2825 Male, age 18, unknown 23.3
1817 Female, age 42, unknown 21.8
2316 Male, age 76, right hemisphere 21.2
1815 Male, age 53, unknown 21.1
1944 Female, age 72, unknown 21.1
2667 Female, age 75, unknown 20.8
2224 Female, age 72, unknown 19.5
2273 Male, age 74, both hemispheres 19.2
Red nucleus
nTPM: 22.3
2584 Male, age 75, left hemisphere 26.3
2588 Male, age 74, left hemisphere 24.6
2503 Female, age 72, unknown 23.8
1954 Female, age 42, unknown 22.9
2227 Male, age 72, unknown 22.8
1821 Female, age 72, unknown 22.7
1865 Male, age 51, unknown 22.1
2769 Male, age 72, unknown 22.1
1904 Male, age 53, unknown 22.0
2785 Male, age 18, unknown 21.8
2725 Female, age 75, unknown 18.4
2823 Male, age 76, right hemisphere 18.4
Substantia nigra
nTPM: 21.5
2583 Male, age 75, right hemisphere 25.7
2590 Female, age 75, unknown 23.3
2665 Male, age 74, both hemispheres 23.0
2409 Female, age 72, unknown 22.1
1851 Male, age 51, unknown 21.4
2241 Male, age 72, unknown 20.8
2699 Male, age 18, unknown 20.2
1916 Female, age 42, unknown 20.0
1889 Female, age 72, unknown 19.5
1941 Male, age 53, unknown 18.7
Superior colliculus
nTPM: 22.7
2664 Male, age 75, both hemispheres 33.5
2261 Male, age 18, unknown 23.3
1796 Male, age 53, unknown 22.8
1839 Male, age 51, unknown 22.6
2668 Female, age 75, unknown 21.8
2587 Male, age 74, left hemisphere 21.4
1995 Male, age 72, unknown 20.9
2087 Female, age 72, unknown 20.9
1913 Female, age 42, unknown 20.4
1895 Male, age 76, right hemisphere 19.2
Ventral tegmental area
nTPM: 20.6
1942 Male, age 51, unknown 21.5
2021 Male, age 53, unknown 21.5
2410 Female, age 72, unknown 21.3
1915 Female, age 42, unknown 20.7
2223 Female, age 72, unknown 20.6
2218 Male, age 76, both hemispheres 18.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.7
Samples: 139

Max nTPM: 25.6
Min nTPM: 8.8
Std nTPM: 2.5
Median nTPM: 12.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 17.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 17.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 16.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 16.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 16.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 17.8
Sample A Female 23.2
Sample B Female 19.1
Sample C Male 17.8
Sample D Male 17.9
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 28.3
Min nTPM: 18.5
Sample A Female 28.3
Sample B Female 18.5
Sample C Male 28.2
Sample D Male 20.4
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 20.4
Min nTPM: 17.5
Sample B Female 17.5
Sample C Male 20.4
Sample D Male 17.7
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.6
Sample A Female 24.7
Sample B Female 20.6
Sample C Male 25.5
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 63.6
Min nTPM: 57.6
Sample A Male 57.6
Sample B Male 63.6
Sample C Female 60.7
Sample D Female 63.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
68845209 Antisense, RP_050224_01_C10, Mouse strain C57BL/6J (56 days, male) 2.0

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