MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:7.2 nTPM
GTEx:4.2 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:68.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
2019 Male, age 18, unknown 7.9
2219 Male, age 76, both hemispheres 7.8
1827 Male, age 72, unknown 7.2
2586 Male, age 75, left hemisphere 6.3
2411 Female, age 72, unknown 6.2
1833 Male, age 53, unknown 5.7
1830 Male, age 51, unknown 5.3
1870 Female, age 42, unknown 5.2
2666 Male, age 74, left hemisphere 5.1
2828 Female, age 72, unknown 5.0
Dorsal raphe nucleus
nTPM: 5.8
2298 Female, age 72, unknown 7.8
2750 Male, age 76, both hemispheres 5.9
2047 Male, age 72, unknown 5.7
2016 Female, age 72, unknown 4.8
1828 Male, age 53, unknown 4.7
Inferior colliculus
nTPM: 7.1
1890 Male, age 53, unknown 8.0
1848 Female, age 42, unknown 7.2
2097 Female, age 72, unknown 6.7
2849 Male, age 72, unknown 6.4
Median raphe nucleus
nTPM: 7.1
2220 Male, age 76, midline 7.1
Periaquaductal grey, anterior
nTPM: 5.9
1947 Male, age 18, unknown 6.4
1795 Male, age 51, unknown 6.3
2502 Female, age 75, unknown 5.1
Periaquaductal grey, dorsal
nTPM: 5.6
1831 Male, age 72, unknown 5.8
1840 Male, age 53, unknown 5.6
2850 Male, age 76, both hemispheres 5.5
2464 Female, age 72, unknown 5.4
Periaquaductal grey, lateral
nTPM: 5.3
2272 Male, age 74, both hemispheres 5.7
2053 Male, age 18, unknown 5.3
2140 Male, age 76, both hemispheres 4.9
Pretectal area
nTPM: 7.2
1817 Female, age 42, unknown 10.1
2007 Male, age 72, unknown 9.5
1816 Male, age 51, unknown 7.9
2667 Female, age 75, unknown 7.7
1815 Male, age 53, unknown 7.5
1944 Female, age 72, unknown 7.3
2407 Male, age 75, both hemispheres 6.4
2273 Male, age 74, both hemispheres 6.1
2316 Male, age 76, right hemisphere 6.1
2224 Female, age 72, unknown 5.4
2825 Male, age 18, unknown 5.0
Red nucleus
nTPM: 6.2
2588 Male, age 74, left hemisphere 7.5
2725 Female, age 75, unknown 7.5
2785 Male, age 18, unknown 7.2
2584 Male, age 75, left hemisphere 6.9
2503 Female, age 72, unknown 6.2
1821 Female, age 72, unknown 6.0
2769 Male, age 72, unknown 5.8
1865 Male, age 51, unknown 5.6
2823 Male, age 76, right hemisphere 5.6
1954 Female, age 42, unknown 5.5
1904 Male, age 53, unknown 5.1
2227 Male, age 72, unknown 5.1
Substantia nigra
nTPM: 6.3
1916 Female, age 42, unknown 8.7
1889 Female, age 72, unknown 7.7
1851 Male, age 51, unknown 7.6
1941 Male, age 53, unknown 7.5
2241 Male, age 72, unknown 6.4
2665 Male, age 74, both hemispheres 5.3
2699 Male, age 18, unknown 5.2
2583 Male, age 75, right hemisphere 5.1
2409 Female, age 72, unknown 4.8
2590 Female, age 75, unknown 4.7
Superior colliculus
nTPM: 6.1
2087 Female, age 72, unknown 8.1
1895 Male, age 76, right hemisphere 7.6
1796 Male, age 53, unknown 7.1
2668 Female, age 75, unknown 6.7
2261 Male, age 18, unknown 6.0
1913 Female, age 42, unknown 5.5
2587 Male, age 74, left hemisphere 5.2
2664 Male, age 75, both hemispheres 5.0
1839 Male, age 51, unknown 4.8
1995 Male, age 72, unknown 4.7
Ventral tegmental area
nTPM: 6.2
2218 Male, age 76, both hemispheres 7.2
1942 Male, age 51, unknown 6.6
2410 Female, age 72, unknown 6.6
1915 Female, age 42, unknown 5.8
2223 Female, age 72, unknown 5.7
2021 Male, age 53, unknown 5.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 10.6
Min nTPM: 0.7
Std nTPM: 1.8
Median nTPM: 4.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 10.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 9.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 9.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 8.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 8.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 8.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 7.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 7.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 7.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 26.5
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 18.7
Sample C Male 21.1
Sample D Male 26.5
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 26.7
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 22.1
Sample C Male 20.5
Sample D Male 26.7
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 26.5
Min nTPM: 20.6
Sample B Female 24.5
Sample C Male 20.6
Sample D Male 26.5
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 16.7
Sample C Male 20.8
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 73.1
Min nTPM: 62.0
Sample A Male 71.1
Sample B Male 68.8
Sample C Female 62.0
Sample D Female 73.1

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