HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:60.7 nTPM
HPA Brain:48.1 nTPM
GTEx:60.7 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:75.5 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052348
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Hippocampus
nTPM: 45.8
1898 Male, age 80, left hemisphere 57.4
1855 Male, age 76, left hemisphere 49.9
2621 Female, age 67, right hemisphere 45.1
2148 Female, age 91, left hemisphere 42.2
2529 Female, age 94, left hemisphere 42.1
1911 Female, age 85, right hemisphere 38.0
Dentate gyrus
nTPM: 43.8
2530 Female, age 94, left hemisphere 51.1
1927 Female, age 91, both hemispheres 48.8
2010 Male, age 76, both hemispheres 47.4
2246 Female, age 85, both hemispheres 40.1
2528 Male, age 74, both hemispheres 39.7
2531 Female, age 67, both hemispheres 35.7
Entorhinal gyrus
nTPM: 41.3
2764 Male, age 80, right hemisphere 46.7
2613 Female, age 94, left hemisphere 42.3
1938 Female, age 85, left hemisphere 41.7
1787 Male, age 76, left hemisphere 41.5
2686 Male, age 75, right hemisphere 38.4
2117 Female, age 91, right hemisphere 37.0
Hippocampus, CA1
nTPM: 48.1
2749 Male, age 80, left hemisphere 75.2
2045 Male, age 76, both hemispheres 45.4
1873 Female, age 85, both hemispheres 45.1
2527 Male, age 74, both hemispheres 40.8
2082 Female, age 91, right hemisphere 34.0
Hippocampus, CA2
nTPM: 44.0
1892 Male, age 76, both hemispheres 57.9
1963 Male, age 80, left hemisphere 55.5
2437 Female, age 94, left hemisphere 43.2
2249 Male, age 74, both hemispheres 39.2
1940 Female, age 85, left hemisphere 34.6
2113 Female, age 91, right hemisphere 33.7
Hippocampus, CA3
nTPM: 44.4
1867 Male, age 76, both hemispheres 49.3
2137 Male, age 80, left hemisphere 48.4
2436 Male, age 74, both hemispheres 46.7
2861 Female, age 67, both hemispheres 42.2
2620 Female, age 94, left hemisphere 40.5
1891 Female, age 85, both hemispheres 39.4
Parahippocampal cortex
nTPM: 39.4
1850 Male, age 80, both hemispheres 46.8
1990 Female, age 91, right hemisphere 42.4
2692 Male, age 74, both hemispheres 40.8
2018 Male, age 76, both hemispheres 40.2
1933 Female, age 85, both hemispheres 39.6
2532 Female, age 72, left hemisphere 39.1
2245 Female, age 91, both hemispheres 38.5
2250 Female, age 67, right hemisphere 36.7
2622 Female, age 67, right hemisphere 36.2
2693 Female, age 94, both hemispheres 33.7
Perirhinal gyrus
nTPM: 43.9
1847 Female, age 91, left hemisphere 51.6
1794 Male, age 80, right hemisphere 48.7
1841 Female, age 85, right hemisphere 43.9
2848 Male, age 76, right hemisphere 38.4
2521 Female, age 94, right hemisphere 36.8
Subiculum
nTPM: 39.1
1901 Male, age 80, both hemispheres 47.5
1977 Female, age 85, both hemispheres 41.9
2619 Male, age 74, both hemispheres 39.7
2042 Male, age 76, both hemispheres 37.3
2729 Female, age 91, right hemisphere 36.5
2438 Female, age 94, left hemisphere 31.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 60.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 60.7
Samples: 197

Max nTPM: 129.6
Min nTPM: 33.1
Std nTPM: 14.6
Median nTPM: 59.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 129.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 95.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 93.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 93.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 92.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 91.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 91.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 90.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 90.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 89.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 88.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.3
FF:10169-103B7 60 years, female 19.7
FF:10153-102I9 76 years, female 12.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Subiculum
nTPM: 25.9
Samples: 4

Max nTPM: 28.9
Min nTPM: 24.3
Sample A Female 28.9
Sample B Female 25.4
Sample C Male 25.0
Sample D Male 24.3
Dorsal hippocampus
nTPM: 27.8
Samples: 4

Max nTPM: 31.2
Min nTPM: 24.1
Sample A Female 31.2
Sample B Female 26.7
Sample C Male 29.3
Sample D Male 24.1
Entorhinal cortex
nTPM: 22.4
Samples: 4

Max nTPM: 24.0
Min nTPM: 21.3
Sample A Female 21.7
Sample B Female 24.0
Sample C Male 22.6
Sample D Male 21.3
Ventral hippocampus
nTPM: 28.5
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.4
Sample A Female 29.6
Sample B Female 23.4
Sample C Male 35.3
Sample D Male 25.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 75.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 69.2
Samples: 4

Max nTPM: 73.0
Min nTPM: 65.6
Sample A Male 66.8
Sample B Male 71.5
Sample C Female 73.0
Sample D Female 65.6
Hippocampal formation
nTPM: 75.5
Samples: 4

Max nTPM: 78.3
Min nTPM: 70.9
Sample A Male 78.0
Sample B Male 70.9
Sample C Female 74.8
Sample D Female 78.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
678686 Antisense, RP_040914_02_D05, Mouse strain C57BL/6J (56 days, male) 2.4

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