PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Ponsi 		83.201
RNA expressioni
HPA Brain:43.7 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:41.3 nTPM
Allen mouse:6.8 Expression energy

PONS - Mouse brain profilei , antibody HPA059985
Pons mean intensity 83.201
intensityi
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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 29.088
Parabrachial nucleus 83.201
Principle sensory trigeminal nucleus 40.234
Locus coeruleus 59.991
Pontine nucleus 18.434
Vestibular nucleus 56.185
Pontine reticular nucleus, oral 30.627
Lateral lemniscus 22.966
Superior paraolivary nucleus 24.819

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 6.1
1984 Male, age 76, both hemispheres 7.9
2301 Female, age 85, both hemispheres 7.6
2090 Male, age 80, both hemispheres 7.1
2188 Female, age 91, both hemispheres 1.9
Area postrema
nTPM: 5.5
2054 Male, age 76, both hemispheres 13.8
2306 Male, age 80, both hemispheres 2.1
2799 Male, age 61, both hemispheres 0.7
Dorsal cochlear nucleus
nTPM: 21.7
2058 Male, age 76, both hemispheres 26.0
2370 Male, age 61, both hemispheres 25.2
2802 Male, age 74, right hemisphere 21.9
2378 Male, age 80, both hemispheres 19.1
2187 Female, age 91, both hemispheres 16.4
Dorsal medullary reticular nucleus
nTPM: 33.3
2040 Female, age 85, both hemispheres 54.3
2088 Male, age 76, both hemispheres 24.1
2373 Male, age 61, both hemispheres 21.5
Dorsal motor vagal complex
nTPM: 21.9
2133 Female, age 91, both hemispheres 41.2
2000 Male, age 74, unknown 29.3
2844 Male, age 55, unknown 26.4
2643 Male, age 74, both hemispheres 17.8
2813 Female, age 72, unknown 17.3
2807 Female, age 85, both hemispheres 15.5
2797 Male, age 61, both hemispheres 15.0
2185 Male, age 76, both hemispheres 13.0
Dorsal tegmental nucleus
nTPM: 20.4
2083 Male, age 80, both hemispheres 32.9
2326 Male, age 74, both hemispheres 17.5
1936 Male, age 76, left hemisphere 17.3
2358 Male, age 61, both hemispheres 14.0
Dorsolateral tegmental area
nTPM: 27.3
2141 Male, age 76, both hemispheres 55.8
2654 Male, age 80, both hemispheres 32.0
2360 Male, age 74, both hemispheres 24.4
2751 Female, age 85, both hemispheres 13.3
2337 Male, age 61, both hemispheres 11.0
Gigantocellular reticular nuclei, medullary
nTPM: 18.4
1876 Female, age 85, both hemispheres 46.6
2022 Male, age 76, right hemisphere 32.4
2310 Male, age 80, both hemispheres 16.3
2387 Female, age 91, both hemispheres 12.2
2462 Male, age 74, both hemispheres 1.7
2314 Male, age 61, both hemispheres 1.2
Gigantocellular reticular nuclei, pars
nTPM: 24.1
2084 Female, age 85, both hemispheres 83.5
2336 Male, age 61, both hemispheres 35.6
2168 Male, age 76, both hemispheres 0.8
2330 Male, age 80, both hemispheres 0.2
2706 Male, age 80, both hemispheres 0.2
Inferior olive
nTPM: 0.6
2563 Male, age 74, both hemispheres 1.9
2085 Female, age 85, both hemispheres 0.7
2628 Female, age 91, both hemispheres 0.6
2178 Male, age 61, both hemispheres 0.1
2379 Male, age 80, both hemispheres 0.0
Kolliker-Fuse nucleus
nTPM: 12.3
2163 Male, age 80, both hemispheres 30.5
2315 Male, age 76, right hemisphere 5.1
2793 Female, age 91, left hemisphere 1.3
Lateral lemniscal nuclei
nTPM: 1.1
2320 Female, age 91, left hemisphere 1.8
2453 Male, age 74, right hemisphere 1.8
2746 Female, age 85, left hemisphere 0.8
2036 Male, age 80, both hemispheres 0.5
2169 Male, age 76, both hemispheres 0.5
Lateral medullary reticular nucleus
nTPM: 5.5
2190 Female, age 85, both hemispheres 10.5
2852 Male, age 80, both hemispheres 9.7
2044 Male, age 76, both hemispheres 6.5
2374 Male, age 61, both hemispheres 3.5
2305 Male, age 74, both hemispheres 2.0
2804 Female, age 91, both hemispheres 0.8
Lateral parabrachial nucleus
nTPM: 9.8
2790 Male, age 61, both hemispheres 29.5
2013 Male, age 80, both hemispheres 6.8
2139 Female, age 85, right hemisphere 2.1
2792 Male, age 76, both hemispheres 1.0
Lateral vestibular nucleus
nTPM: 22.6
2184 Male, age 76, both hemispheres 23.0
2311 Male, age 80, both hemispheres 22.2
Locus coeruleus
nTPM: 12.0
2123 Female, age 91, both hemispheres 19.4
2162 Male, age 80, both hemispheres 19.4
1980 Male, age 76, both hemispheres 13.8
2317 Female, age 72, unknown 11.1
2720 Male, age 74, both hemispheres 8.2
2014 Male, age 55, unknown 7.4
2788 Male, age 74, unknown 4.7
Medial olivary nucleus
nTPM: 1.2
2851 Male, age 80, both hemispheres 3.2
1962 Male, age 76, both hemispheres 0.9
2138 Female, age 91, both hemispheres 0.5
1943 Male, age 61, both hemispheres 0.1
Medial parabrachial nucleus
nTPM: 28.0
2786 Male, age 76, both hemispheres 41.3
2156 Male, age 61, both hemispheres 38.5
2854 Male, age 80, both hemispheres 33.7
2170 Female, age 91, both hemispheres 21.0
2463 Female, age 85, right hemisphere 5.6
Medial periolivary nuclei
nTPM: 0.8
2791 Male, age 74, right hemisphere 2.3
2458 Female, age 91, both hemispheres 1.3
2171 Female, age 85, both hemispheres 0.4
2081 Male, age 80, both hemispheres 0.2
2063 Male, age 76, both hemispheres 0.0
Medial vestibular nucleus
nTPM: 28.0
2093 Male, age 80, both hemispheres 78.2
2803 Female, age 91, both hemispheres 34.7
2134 Male, age 76, both hemispheres 18.1
2624 Male, age 61, both hemispheres 13.7
2743 Female, age 85, both hemispheres 12.1
2801 Male, age 74, both hemispheres 11.1
Motor facial nucleus
nTPM: 8.7
2126 Male, age 61, both hemispheres 48.9
2365 Male, age 74, right hemisphere 1.7
2795 Female, age 91, both hemispheres 0.6
2327 Male, age 80, both hemispheres 0.5
2062 Male, age 76, both hemispheres 0.2
2697 Female, age 85, both hemispheres 0.2
Motor hypoglossal nucleus
nTPM: 30.8
2132 Female, age 85, both hemispheres 53.5
2125 Female, age 91, both hemispheres 39.8
2461 Male, age 61, both hemispheres 21.8
2277 Male, age 76, both hemispheres 19.7
2182 Male, age 80, both hemispheres 19.2
Motor trigeminal nucleus
nTPM: 19.2
2335 Male, age 61, both hemispheres 46.5
2309 Male, age 76, both hemispheres 34.4
2321 Female, age 91, both hemispheres 8.7
2560 Male, age 74, both hemispheres 6.2
2079 Male, age 80, both hemispheres 0.3
Nuclei of the trapezoid body
nTPM: 0.3
2368 Female, age 91, both hemispheres 0.8
2159 Male, age 61, both hemispheres 0.5
2166 Male, age 80, both hemispheres 0.1
1983 Male, age 76, both hemispheres 0.0
2735 Female, age 85, both hemispheres 0.0
Nucleus ambiguus
nTPM: 35.1
2096 Female, age 85, both hemispheres 65.1
2071 Male, age 76, both hemispheres 5.1
Nucleus cuneatus
nTPM: 12.2
2562 Male, age 61, both hemispheres 28.4
2564 Male, age 74, both hemispheres 14.5
2381 Male, age 80, both hemispheres 13.1
2100 Male, age 76, both hemispheres 12.6
2805 Female, age 91, both hemispheres 12.1
2131 Male, age 76, both hemispheres 11.8
2376 Male, age 61, both hemispheres 7.5
2808 Female, age 85, both hemispheres 6.7
2380 Male, age 80, both hemispheres 3.5
Nucleus gracilis
nTPM: 6.7
2627 Male, age 74, both hemispheres 9.6
2382 Male, age 80, both hemispheres 5.4
2299 Female, age 85, both hemispheres 5.1
Nucleus raphe magnus
nTPM: 0.9
2455 Male, age 74, both hemispheres 2.0
2459 Female, age 91, both hemispheres 1.7
2160 Male, age 61, both hemispheres 1.6
2328 Male, age 80, both hemispheres 0.2
2051 Male, age 76, both hemispheres 0.0
2172 Female, age 85, both hemispheres 0.0
Nucleus raphe obscurus
nTPM: 3.6
2800 Male, age 61, midline 4.3
2142 Male, age 76, midline 4.2
2845 Female, age 85, midline 2.4
Nucleus raphe pallidus
nTPM: 6.8
2183 Male, age 80, midline 17.9
2145 Male, age 76, midline 2.4
1924 Male, age 61, midline 0.2
Nucleus tractus solitarii
nTPM: 17.0
2656 Male, age 76, both hemispheres 22.2
2307 Male, age 80, both hemispheres 17.3
2144 Female, age 91, right hemisphere 16.2
2191 Female, age 85, both hemispheres 12.2
Paramedian reticular nucleus
nTPM: 30.2
2313 Male, age 61, both hemispheres 55.5
2057 Male, age 80, both hemispheres 32.6
2052 Male, age 76, both hemispheres 17.4
2050 Female, age 85, both hemispheres 15.4
Parvicellular reticular nuclei
nTPM: 30.4
2119 Male, age 80, both hemispheres 70.7
2095 Male, age 76, both hemispheres 18.3
2558 Male, age 74, both hemispheres 2.1
Parvicellular reticular nuclei, medullary
nTPM: 38.8
2189 Female, age 91, both hemispheres 55.8
2181 Male, age 80, left hemisphere 32.9
2091 Female, age 85, both hemispheres 27.6
Pedunculopontine tegmental nucleus
nTPM: 19.7
1921 Female, age 85, both hemispheres 30.8
2334 Male, age 80, both hemispheres 17.6
2338 Male, age 61, both hemispheres 10.8
Peritrigeminal nucleus
nTPM: 5.1
2067 Female, age 85, both hemispheres 7.1
2179 Male, age 61, both hemispheres 6.6
2136 Male, age 76, both hemispheres 1.5
Pontine nuclei
nTPM: 0.6
2454 Male, age 74, left hemisphere 2.0
2319 Female, age 91, both hemispheres 1.4
2727 Male, age 61, right hemisphere 0.6
2115 Male, age 80, left hemisphere 0.4
2109 Female, age 72, unknown 0.3
2787 Female, age 85, both hemispheres 0.2
1863 Male, age 55, unknown 0.0
1968 Male, age 76, left hemisphere 0.0
Pontine raphe nucleus
nTPM: 23.3
2853 Male, age 76, midline 36.9
2122 Female, age 85, midline 9.6
Posteroventral cochlear nucleus
nTPM: 14.1
2752 Female, age 85, both hemispheres 37.6
2070 Male, age 76, both hemispheres 15.6
2371 Male, age 61, both hemispheres 15.2
2341 Male, age 80, both hemispheres 1.8
2135 Female, age 91, both hemispheres 0.5
Prepositus hypoglossal nucleus
nTPM: 30.2
2086 Male, age 80, both hemispheres 38.8
2855 Female, age 85, right hemisphere 21.6
Principal sensory trigeminal nucleus
nTPM: 7.2
2324 Male, age 76, both hemispheres 24.7
2158 Male, age 61, both hemispheres 1.8
2367 Female, age 91, left hemisphere 1.3
2008 Male, age 80, left hemisphere 1.1
Reticular pontine nucleus, caudal
nTPM: 11.1
2559 Male, age 74, both hemispheres 42.6
2092 Male, age 76, both hemispheres 0.8
2457 Female, age 91, both hemispheres 0.8
2332 Male, age 80, right hemisphere 0.3
Reticular pontine nucleus, oral
nTPM: 10.8
2167 Male, age 76, both hemispheres 27.0
1939 Male, age 80, both hemispheres 17.2
2361 Male, age 74, both hemispheres 5.4
2012 Female, age 85, both hemispheres 3.6
2366 Female, age 91, both hemispheres 1.0
Reticulotegmental nucleus
nTPM: 13.4
2333 Male, age 80, both hemispheres 14.0
2325 Male, age 76, both hemispheres 13.9
2322 Female, age 91, both hemispheres 13.1
2452 Male, age 74, both hemispheres 12.6
Spinal trigeminal nucleus, caudal
nTPM: 24.8
2390 Female, age 91, both hemispheres 35.9
2642 Male, age 74, both hemispheres 25.1
2308 Male, age 80, both hemispheres 22.2
2312 Male, age 61, both hemispheres 20.5
2447 Male, age 76, both hemispheres 20.2
Spinal trigeminal nucleus, interpolar
nTPM: 23.1
2033 Male, age 80, both hemispheres 44.0
2386 Female, age 85, both hemispheres 36.1
2389 Female, age 91, both hemispheres 16.8
2625 Male, age 61, both hemispheres 15.0
2066 Male, age 76, right hemisphere 3.4
Spinal trigeminal nucleus, oral
nTPM: 30.9
2737 Female, age 85, both hemispheres 44.3
1978 Male, age 76, both hemispheres 26.5
2164 Male, age 80, both hemispheres 22.0
Spinal vestibular nucleus
nTPM: 43.7
2186 Female, age 91, both hemispheres 72.6
2796 Male, age 61, both hemispheres 50.1
2780 Male, age 80, both hemispheres 46.7
2748 Male, age 76, both hemispheres 37.7
2806 Female, age 85, both hemispheres 31.2
2384 Male, age 74, both hemispheres 23.6
Subcoeruleus area
nTPM: 18.8
2323 Female, age 91, left hemisphere 36.2
2451 Male, age 74, both hemispheres 17.7
1958 Male, age 80, both hemispheres 17.3
2369 Female, age 85, left hemisphere 13.0
2089 Male, age 76, left hemisphere 9.8
Superior olive
nTPM: 1.1
2364 Male, age 74, right hemisphere 2.7
2561 Female, age 91, both hemispheres 1.5
1875 Female, age 85, both hemispheres 0.5
2020 Male, age 76, both hemispheres 0.4
2329 Male, age 80, right hemisphere 0.2
Superior vestibular nucleus
nTPM: 20.5
2061 Male, age 76, both hemispheres 25.0
2015 Male, age 80, both hemispheres 18.9
2383 Male, age 74, both hemispheres 17.5
Ventral medullary reticular nucleus
nTPM: 18.2
2060 Male, age 76, both hemispheres 34.3
2372 Male, age 61, both hemispheres 2.1
Ventral periolivary nuclei
nTPM: 0.5
2794 Female, age 91, left hemisphere 1.8
2130 Female, age 85, both hemispheres 0.2
2165 Male, age 80, both hemispheres 0.1
2023 Male, age 76, both hemispheres 0.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 6.3
2180 Male, age 61, both hemispheres 11.7
2741 Female, age 85, both hemispheres 11.2
2118 Male, age 80, both hemispheres 4.8
1986 Male, age 76, both hemispheres 2.6
2302 Female, age 91, both hemispheres 1.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 7.8
2840 Female, age 85, both hemispheres 29.9
2359 Male, age 61, both hemispheres 12.2
2449 Male, age 74, both hemispheres 3.0
2456 Female, age 91, both hemispheres 1.1
2161 Male, age 80, both hemispheres 0.4
1959 Male, age 76, both hemispheres 0.0

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 37.1
FF:10182-103D2 60 years, female 61.3
FF:10165-103B3 76 years, female 12.8
Medulla oblongata
Scaled Tags Per Million: 11.1
FF:10038-101F2 18-64 years, mixed 15.5
FF:10174-103C3 60 years, female 10.7
FF:10155-103A2 76 years, female 7.1
Pons
Scaled Tags Per Million: 4.2
FF:10033-101E6 18-54 years, mixed 4.2

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
16.324.035.95.359.40510152025303540455055
 		Medulla oblongata
nTPM: 28.2
Samples: 4

Max nTPM: 59.4
Min nTPM: 5.3
Sample A Female 28.1
Sample B Female 19.9
Sample C Male 59.4
Sample D Male 5.3
15.229.340.56.640.70510152025303540
 		Pons
nTPM: 26.5
Samples: 4

Max nTPM: 40.7
Min nTPM: 6.6
Sample A Female 40.4
Sample B Female 40.7
Sample C Male 18.1
Sample D Male 6.6

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 41.3
Mouse sample Sample description nTPM
37.341.045.036.147.3051015202530354045
 		Pons and medulla
nTPM: 41.4
Samples: 4

Max nTPM: 47.3
Min nTPM: 36.1
Sample A Male 47.3
Sample B Male 36.1
Sample C Female 44.3
Sample D Female 37.7

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 6.8
72081554 Antisense, RP_051017_01_D07, Mouse strain C57BL/6J (56 days, male) 9.6
79677349 Antisense, RP_071204_02_A05, Mouse strain C57BL/6J (56 days, male) 7.7
1098 Antisense, RP_Baylor_103102, Mouse strain C57BL/6J (56 days, male) 3.1
1099 Antisense, RP_Baylor_103102, Mouse strain C57BL/6J (56 days, male) 3.0
Pons
Expression energy: 6.5
72081554 Antisense, RP_051017_01_D07, Mouse strain C57BL/6J (56 days, male) 9.4
79677349 Antisense, RP_071204_02_A05, Mouse strain C57BL/6J (56 days, male) 6.7
1098 Antisense, RP_Baylor_103102, Mouse strain C57BL/6J (56 days, male) 3.2
1099 Antisense, RP_Baylor_103102, Mouse strain C57BL/6J (56 days, male) 1.9

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