HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		89.527
RNA expressioni
Consensus:411.6 nTPM
HPA Brain:598.7 nTPM
GTEx:411.6 nTPM
FANTOM5:350.9 Scaled Tags Per Million
Pig:849.7 nTPM
Mouse:24.7 nTPM
Allen mouse:12.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003925Antibody HPA064734
Glial cells MediumMedium
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA003925
Hippocampal formation mean intensity 89.527
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 72.631
Molecular layer of the dentate gyrus 18.071
Granular dentate gyrus 26.416
CA1 - oriens layer 14.115
CA1 - pyramidal layer 16.977
CA1 - radiatum layer 15.521
CA2 - oriens layer 21.429
CA2 - pyramidal layer 21.647
CA2 - radiatum layer 20.421
CA3 - oriens layer 19.198
CA3 - pyramidal layer 17.032
CA3 - radiatum layer 16.498
Stratum lucidum 89.527
Lacunosum moleculare 15.092
Subiculum 17.022

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 598.7
Sample id Sample description nTPM
Hippocampus
nTPM: 546.6
2621 Female, age 67, right hemisphere 645.6
1898 Male, age 80, left hemisphere 629.5
2148 Female, age 91, left hemisphere 589.6
2529 Female, age 94, left hemisphere 552.6
1855 Male, age 76, left hemisphere 500.9
1911 Female, age 85, right hemisphere 361.6
Dentate gyrus
nTPM: 598.7
2530 Female, age 94, left hemisphere 888.1
2531 Female, age 67, both hemispheres 704.2
1927 Female, age 91, both hemispheres 606.3
2246 Female, age 85, both hemispheres 492.7
2010 Male, age 76, both hemispheres 488.7
2528 Male, age 74, both hemispheres 412.4
Entorhinal gyrus
nTPM: 526.8
2764 Male, age 80, right hemisphere 683.1
2613 Female, age 94, left hemisphere 593.9
1787 Male, age 76, left hemisphere 518.2
2117 Female, age 91, right hemisphere 468.1
1938 Female, age 85, left hemisphere 452.1
2686 Male, age 75, right hemisphere 445.6
Hippocampus, CA1
nTPM: 491.8
2749 Male, age 80, left hemisphere 727.9
2045 Male, age 76, both hemispheres 493.9
1873 Female, age 85, both hemispheres 444.1
2527 Male, age 74, both hemispheres 436.5
2082 Female, age 91, right hemisphere 356.4
Hippocampus, CA2
nTPM: 491.6
1963 Male, age 80, left hemisphere 679.1
2437 Female, age 94, left hemisphere 605.2
1892 Male, age 76, both hemispheres 482.3
2113 Female, age 91, right hemisphere 431.5
1940 Female, age 85, left hemisphere 418.1
2249 Male, age 74, both hemispheres 333.3
Hippocampus, CA3
nTPM: 513.2
2861 Female, age 67, both hemispheres 780.6
2620 Female, age 94, left hemisphere 664.6
2137 Male, age 80, left hemisphere 503.7
2436 Male, age 74, both hemispheres 436.5
1867 Male, age 76, both hemispheres 387.9
1891 Female, age 85, both hemispheres 305.8
Parahippocampal cortex
nTPM: 519.3
2245 Female, age 91, both hemispheres 779.0
2250 Female, age 67, right hemisphere 622.2
2622 Female, age 67, right hemisphere 575.9
2693 Female, age 94, both hemispheres 548.9
2532 Female, age 72, left hemisphere 518.6
1990 Female, age 91, right hemisphere 516.8
1933 Female, age 85, both hemispheres 458.7
1850 Male, age 80, both hemispheres 433.2
2018 Male, age 76, both hemispheres 404.2
2692 Male, age 74, both hemispheres 335.4
Perirhinal gyrus
nTPM: 583.0
1794 Male, age 80, right hemisphere 694.3
2521 Female, age 94, right hemisphere 685.7
1847 Female, age 91, left hemisphere 600.1
2848 Male, age 76, right hemisphere 492.9
1841 Female, age 85, right hemisphere 442.1
Subiculum
nTPM: 412.4
1977 Female, age 85, both hemispheres 531.1
2619 Male, age 74, both hemispheres 489.8
2438 Female, age 94, left hemisphere 413.9
2729 Female, age 91, right hemisphere 385.8
1901 Male, age 80, both hemispheres 363.9
2042 Male, age 76, both hemispheres 289.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 411.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 411.6
Samples: 197

Max nTPM: 1218.4
Min nTPM: 25.1
Std nTPM: 215.3
Median nTPM: 391.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1218.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 1037.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 939.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 921.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 897.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 894.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 878.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 857.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 840.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 838.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 837.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 350.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 350.9
FF:10169-103B7 60 years, female 410.2
FF:10153-102I9 76 years, female 291.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 849.7
Pig sample Sample description nTPM
Subiculum
nTPM: 812.4
Samples: 4

Max nTPM: 1247.9
Min nTPM: 568.8
Sample A Female 1247.9
Sample B Female 712.3
Sample C Male 720.6
Sample D Male 568.8
Dorsal hippocampus
nTPM: 750.0
Samples: 4

Max nTPM: 950.8
Min nTPM: 491.4
Sample A Female 950.8
Sample B Female 711.0
Sample C Male 846.6
Sample D Male 491.4
Entorhinal cortex
nTPM: 805.5
Samples: 4

Max nTPM: 1038.4
Min nTPM: 606.5
Sample A Female 764.2
Sample B Female 813.0
Sample C Male 1038.4
Sample D Male 606.5
Ventral hippocampus
nTPM: 849.7
Samples: 4

Max nTPM: 1182.8
Min nTPM: 608.8
Sample A Female 956.9
Sample B Female 608.8
Sample C Male 1182.8
Sample D Male 650.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.7
Samples: 4

Max nTPM: 34.1
Min nTPM: 17.1
Sample A Male 29.5
Sample B Male 34.1
Sample C Female 18.2
Sample D Female 17.1
Hippocampal formation
nTPM: 19.6
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.6
Sample A Male 16.6
Sample B Male 21.4
Sample C Female 14.6
Sample D Female 25.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.7
79360249 Antisense, RP_071018_01_E06, Mouse strain C57BL/6J (56 days, male) 20.5
777 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 4.8
778 Antisense, RP_040315_01_19, Mouse strain C57BL/6J (56 days, male) 3.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org