HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:29.6 nTPM
GTEx:26.1 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:55.8 nTPM
Allen mouse:5.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003617
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Hippocampus
nTPM: 26.6
1898 Male, age 80, left hemisphere 34.3
2621 Female, age 67, right hemisphere 29.9
2148 Female, age 91, left hemisphere 28.8
2529 Female, age 94, left hemisphere 23.2
1855 Male, age 76, left hemisphere 22.5
1911 Female, age 85, right hemisphere 20.9
Dentate gyrus
nTPM: 26.0
1927 Female, age 91, both hemispheres 29.3
2530 Female, age 94, left hemisphere 28.7
2531 Female, age 67, both hemispheres 28.1
2010 Male, age 76, both hemispheres 24.4
2246 Female, age 85, both hemispheres 23.2
2528 Male, age 74, both hemispheres 22.2
Entorhinal gyrus
nTPM: 28.6
2613 Female, age 94, left hemisphere 33.2
2764 Male, age 80, right hemisphere 30.6
1938 Female, age 85, left hemisphere 29.2
2686 Male, age 75, right hemisphere 28.4
1787 Male, age 76, left hemisphere 25.6
2117 Female, age 91, right hemisphere 24.4
Hippocampus, CA1
nTPM: 28.3
2749 Male, age 80, left hemisphere 44.9
1873 Female, age 85, both hemispheres 27.4
2527 Male, age 74, both hemispheres 26.8
2082 Female, age 91, right hemisphere 21.6
2045 Male, age 76, both hemispheres 20.8
Hippocampus, CA2
nTPM: 29.0
1963 Male, age 80, left hemisphere 40.1
1892 Male, age 76, both hemispheres 30.1
2437 Female, age 94, left hemisphere 28.9
1940 Female, age 85, left hemisphere 28.4
2249 Male, age 74, both hemispheres 25.3
2113 Female, age 91, right hemisphere 21.6
Hippocampus, CA3
nTPM: 28.2
2137 Male, age 80, left hemisphere 35.1
2861 Female, age 67, both hemispheres 32.0
2620 Female, age 94, left hemisphere 27.5
1867 Male, age 76, both hemispheres 26.3
1891 Female, age 85, both hemispheres 24.2
2436 Male, age 74, both hemispheres 24.1
Parahippocampal cortex
nTPM: 26.2
1850 Male, age 80, both hemispheres 32.5
1990 Female, age 91, right hemisphere 28.6
2245 Female, age 91, both hemispheres 27.8
2532 Female, age 72, left hemisphere 26.5
2622 Female, age 67, right hemisphere 26.1
2692 Male, age 74, both hemispheres 25.7
2250 Female, age 67, right hemisphere 25.1
2693 Female, age 94, both hemispheres 25.0
1933 Female, age 85, both hemispheres 24.6
2018 Male, age 76, both hemispheres 20.0
Perirhinal gyrus
nTPM: 29.6
2521 Female, age 94, right hemisphere 32.5
1794 Male, age 80, right hemisphere 31.8
1847 Female, age 91, left hemisphere 31.3
1841 Female, age 85, right hemisphere 28.7
2848 Male, age 76, right hemisphere 23.6
Subiculum
nTPM: 27.1
2438 Female, age 94, left hemisphere 36.2
1901 Male, age 80, both hemispheres 29.9
1977 Female, age 85, both hemispheres 27.3
2619 Male, age 74, both hemispheres 25.5
2729 Female, age 91, right hemisphere 22.7
2042 Male, age 76, both hemispheres 21.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.1
Samples: 197

Max nTPM: 46.4
Min nTPM: 11.5
Std nTPM: 6.7
Median nTPM: 25.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 46.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 41.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 41.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 41.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 40.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 39.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 39.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 39.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 39.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 38.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 37.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.9
FF:10169-103B7 60 years, female 16.6
FF:10153-102I9 76 years, female 13.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.6
Pig sample Sample description nTPM
Subiculum
nTPM: 34.4
Samples: 4

Max nTPM: 47.4
Min nTPM: 29.6
Sample A Female 47.4
Sample B Female 29.6
Sample C Male 30.3
Sample D Male 30.2
Dorsal hippocampus
nTPM: 40.6
Samples: 4

Max nTPM: 54.3
Min nTPM: 30.0
Sample A Female 54.3
Sample B Female 35.3
Sample C Male 42.7
Sample D Male 30.0
Entorhinal cortex
nTPM: 39.0
Samples: 4

Max nTPM: 41.7
Min nTPM: 34.1
Sample A Female 39.2
Sample B Female 41.7
Sample C Male 40.9
Sample D Male 34.1
Ventral hippocampus
nTPM: 35.8
Samples: 4

Max nTPM: 43.6
Min nTPM: 26.9
Sample A Female 35.6
Sample B Female 26.9
Sample C Male 43.6
Sample D Male 37.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.8
Samples: 4

Max nTPM: 59.6
Min nTPM: 51.2
Sample A Male 51.2
Sample B Male 56.8
Sample C Female 55.6
Sample D Female 59.6
Hippocampal formation
nTPM: 52.7
Samples: 4

Max nTPM: 57.9
Min nTPM: 48.1
Sample A Male 57.9
Sample B Male 48.1
Sample C Female 52.2
Sample D Female 52.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.9
75774670 Antisense, RP_060530_01_C07, Mouse strain C57BL/6J (56 days, male) 11.6
393217 Antisense, RP_040804_02_E07, Mouse strain C57BL/6J (56 days, male) 5.8
70813365 Antisense, RP_050712_03_G10, Mouse strain C57BL/6J (56 days, male) 0.3

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