MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.4 nTPM
HPA Brain:55.6 nTPM
GTEx:68.4 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:47.3 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.6
1870 Female, age 42, unknown 51.1
2219 Male, age 76, both hemispheres 50.8
1827 Male, age 72, unknown 50.0
2666 Male, age 74, left hemisphere 49.8
2411 Female, age 72, unknown 48.1
2828 Female, age 72, unknown 47.8
2586 Male, age 75, left hemisphere 47.4
1833 Male, age 53, unknown 46.7
1830 Male, age 51, unknown 43.7
2019 Male, age 18, unknown 40.7
Dorsal raphe nucleus
nTPM: 49.4
2016 Female, age 72, unknown 56.6
1828 Male, age 53, unknown 54.7
2047 Male, age 72, unknown 47.8
2298 Female, age 72, unknown 44.5
2750 Male, age 76, both hemispheres 43.5
Inferior colliculus
nTPM: 55.6
2849 Male, age 72, unknown 60.0
1890 Male, age 53, unknown 56.4
2097 Female, age 72, unknown 53.9
1848 Female, age 42, unknown 52.0
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Periaquaductal grey, anterior
nTPM: 45.3
2502 Female, age 75, unknown 48.6
1947 Male, age 18, unknown 44.5
1795 Male, age 51, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 50.6
2850 Male, age 76, both hemispheres 57.5
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 46.5
1831 Male, age 72, unknown 45.7
Periaquaductal grey, lateral
nTPM: 45.5
2053 Male, age 18, unknown 50.9
2140 Male, age 76, both hemispheres 46.4
2272 Male, age 74, both hemispheres 39.4
Pretectal area
nTPM: 50.7
1816 Male, age 51, unknown 62.3
1817 Female, age 42, unknown 54.2
1815 Male, age 53, unknown 53.7
2224 Female, age 72, unknown 53.1
1944 Female, age 72, unknown 52.8
2273 Male, age 74, both hemispheres 49.2
2825 Male, age 18, unknown 48.2
2407 Male, age 75, both hemispheres 47.8
2007 Male, age 72, unknown 46.4
2667 Female, age 75, unknown 46.4
2316 Male, age 76, right hemisphere 43.5
Red nucleus
nTPM: 48.4
2503 Female, age 72, unknown 59.2
2725 Female, age 75, unknown 56.0
1821 Female, age 72, unknown 51.8
1954 Female, age 42, unknown 51.2
1865 Male, age 51, unknown 47.6
2769 Male, age 72, unknown 47.5
1904 Male, age 53, unknown 47.4
2823 Male, age 76, right hemisphere 46.5
2227 Male, age 72, unknown 46.4
2588 Male, age 74, left hemisphere 45.5
2785 Male, age 18, unknown 43.1
2584 Male, age 75, left hemisphere 38.9
Substantia nigra
nTPM: 51.8
2699 Male, age 18, unknown 59.6
2241 Male, age 72, unknown 59.3
2409 Female, age 72, unknown 57.8
2665 Male, age 74, both hemispheres 54.0
1916 Female, age 42, unknown 51.5
1889 Female, age 72, unknown 50.0
2590 Female, age 75, unknown 47.1
1941 Male, age 53, unknown 46.8
1851 Male, age 51, unknown 46.1
2583 Male, age 75, right hemisphere 45.5
Superior colliculus
nTPM: 49.0
2587 Male, age 74, left hemisphere 54.0
2261 Male, age 18, unknown 52.3
1839 Male, age 51, unknown 51.7
2087 Female, age 72, unknown 50.4
1913 Female, age 42, unknown 49.7
1995 Male, age 72, unknown 48.4
2668 Female, age 75, unknown 46.7
1796 Male, age 53, unknown 46.5
2664 Male, age 75, both hemispheres 45.7
1895 Male, age 76, right hemisphere 44.6
Ventral tegmental area
nTPM: 47.8
2223 Female, age 72, unknown 51.7
1915 Female, age 42, unknown 49.1
1942 Male, age 51, unknown 47.5
2218 Male, age 76, both hemispheres 47.4
2410 Female, age 72, unknown 46.1
2021 Male, age 53, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.4
Samples: 139

Max nTPM: 120.3
Min nTPM: 39.8
Std nTPM: 15.2
Median nTPM: 66.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 120.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 117.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 115.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 113.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 102.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 101.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 101.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 98.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 93.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 91.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 91.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.2
FF:10158-103A5 76 years, female 54.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.2
Samples: 4

Max nTPM: 38.0
Min nTPM: 27.8
Sample A Female 38.0
Sample B Female 27.8
Sample C Male 32.4
Sample D Male 34.5
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 48.7
Min nTPM: 26.8
Sample A Female 48.7
Sample B Female 35.5
Sample C Male 26.8
Sample D Male 28.8
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 33.2
Min nTPM: 28.3
Sample B Female 33.2
Sample C Male 31.7
Sample D Male 28.3
Superior colliculi
nTPM: 30.0
Samples: 4

Max nTPM: 36.1
Min nTPM: 23.8
Sample A Female 36.1
Sample B Female 23.8
Sample C Male 27.6
Sample D Male 32.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 44.2
Sample A Male 44.2
Sample B Male 48.9
Sample C Female 50.7
Sample D Female 45.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69059923 Antisense, RP_050317_04_E04, Mouse strain C57BL/6J (56 days, male) 1.7

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