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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
56.9
nTPM
Monaco:
58.3
nTPM
Schmiedel:
50.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
56.9
HPA sample
nTPM
gdT-cell nTPM: 12.9
Samples: 6
Max nTPM: 19.0
Min nTPM: 7.2
P10809_1007
7.4
P10809_1022
9.8
P10809_1041
17.2
P10809_1060
19.0
P10809_1077
16.8
P10809_1098
7.2
MAIT T-cell nTPM: 6.5
Samples: 6
Max nTPM: 15.0
Min nTPM: 1.9
P10809_1006
5.7
P10809_1024
1.9
P10809_1043
3.3
P10809_1062
10.2
P10809_1083
15.0
P10809_1097
2.7
Memory CD4 T-cell nTPM: 20.4
Samples: 6
Max nTPM: 25.8
Min nTPM: 15.2
P10809_1014
15.9
P10809_1026
18.0
P10809_1045
25.1
P10809_1064
25.8
P10809_1086
22.2
P10809_1113
15.2
Memory CD8 T-cell nTPM: 15.4
Samples: 5
Max nTPM: 18.2
Min nTPM: 8.7
P10809_1012
14.7
P10809_1027
8.7
P10809_1046
18.2
P10809_1065
17.3
P10809_1111
18.1
Naive CD4 T-cell nTPM: 25.8
Samples: 6
Max nTPM: 36.6
Min nTPM: 18.1
P10809_1015
18.1
P10809_1030
19.1
P10809_1049
29.7
P10809_1068
36.6
P10809_1085
27.9
P10809_1112
23.2
Naive CD8 T-cell nTPM: 15.4
Samples: 6
Max nTPM: 21.0
Min nTPM: 7.4
P10809_1016
16.7
P10809_1031
18.8
P10809_1050
13.9
P10809_1069
21.0
P10809_1087
14.8
P10809_1110
7.4
T-reg nTPM: 56.9
Samples: 6
Max nTPM: 98.1
Min nTPM: 31.7
P10809_1018
36.5
P10809_1037
42.4
P10809_1056
31.7
P10809_1075
67.2
P10809_1094
98.1
P10809_1106
65.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
58.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 34.5
Samples: 4
Max nTPM: 44.9
Min nTPM: 20.7
RHH5202_R3573
38.3
RHH5230_R3602
33.9
RHH5259_R3631
20.7
RHH5288_R3660
44.9
Effector memory CD8 T-cell nTPM: 33.6
Samples: 4
Max nTPM: 62.7
Min nTPM: 17.6
RHH5203_R3574
62.7
RHH5231_R3603
17.6
RHH5260_R3632
20.6
RHH5289_R3661
33.4
MAIT T-cell nTPM: 15.2
Samples: 4
Max nTPM: 23.0
Min nTPM: 11.8
RHH5233_R3605
23.0
RHH5205_R3576
12.3
RHH5262_R3634
13.8
RHH5297_R3663
11.8
Memory CD4 T-cell TFH nTPM: 58.3
Samples: 4
Max nTPM: 68.4
Min nTPM: 50.4
RHH5300_R3666
52.6
RHH5236_R3608
61.7
RHH5265_R3637
50.4
RHH5208_R3579
68.4
Memory CD4 T-cell Th1 nTPM: 36.9
Samples: 4
Max nTPM: 47.0
Min nTPM: 24.3
RHH5210_R3581
39.8
RHH5302_R3668
47.0
RHH5238_R3610
24.3
RHH5267_R3639
36.5
Memory CD4 T-cell Th1/Th17 nTPM: 27.1
Samples: 4
Max nTPM: 31.2
Min nTPM: 20.1
RHH5303_R3669
31.2
RHH5211_R3582
29.8
RHH5239_R3611
20.1
RHH5268_R3640
27.4
Memory CD4 T-cell Th17 nTPM: 25.3
Samples: 4
Max nTPM: 31.4
Min nTPM: 18.9
RHH5304_R3670
25.6
RHH5212_R3583
25.1
RHH5240_R3612
18.9
RHH5269_R3641
31.4
Memory CD4 T-cell Th2 nTPM: 48.0
Samples: 4
Max nTPM: 50.2
Min nTPM: 45.5
RHH5305_R3671
50.2
RHH5213_R3584
45.5
RHH5241_R3613
48.1
RHH5270_R3642
48.1
Naive CD4 T-cell nTPM: 37.4
Samples: 4
Max nTPM: 46.9
Min nTPM: 30.1
RHH5306_R3672
30.1
RHH5214_R3585
46.9
RHH5242_R3614
35.2
RHH5271_R3643
37.2
Naive CD8 T-cell nTPM: 21.6
Samples: 4
Max nTPM: 26.4
Min nTPM: 14.4
RHH5201_R3572
22.9
RHH5229_R3601
14.4
RHH5258_R3630
22.6
RHH5287_R3659
26.4
Non-Vd2 gdTCR nTPM: 25.0
Samples: 4
Max nTPM: 36.4
Min nTPM: 13.8
RHH5235_R3607
13.8
RHH5264_R3636
30.9
RHH5207_R3578
36.4
RHH5299_R3665
18.8
T-reg nTPM: 46.2
Samples: 4
Max nTPM: 63.9
Min nTPM: 34.3
RHH5301_R3667
43.3
RHH5237_R3609
63.9
RHH5266_R3638
43.4
RHH5209_R3580
34.3
Terminal effector memory CD4 T-cell nTPM: 8.4
Samples: 2
Max nTPM: 13.8
Min nTPM: 3.0
RHH5243_R3615
3.0
RHH5272_R3644
13.8
Terminal effector memory CD8 T-cell nTPM: 16.6
Samples: 4
Max nTPM: 34.7
Min nTPM: 3.1
RHH5232_R3604
15.8
RHH5204_R3575
34.7
RHH5261_R3633
3.1
RHH5296_R3662
12.6
Vd2 gdTCR nTPM: 23.9
Samples: 4
Max nTPM: 27.2
Min nTPM: 16.7
RHH5234_R3606
24.6
RHH5206_R3577
27.0
RHH5263_R3635
16.7
RHH5298_R3664
27.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
