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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.3
nTPM
Monaco:
70.4
nTPM
Schmiedel:
62.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
25.3
HPA sample
nTPM
gdT-cell nTPM: 23.9
Samples: 6
Max nTPM: 41.9
Min nTPM: 16.6
P10809_1007
20.6
P10809_1022
17.7
P10809_1041
23.4
P10809_1060
16.6
P10809_1077
23.4
P10809_1098
41.9
MAIT T-cell nTPM: 25.3
Samples: 6
Max nTPM: 36.5
Min nTPM: 19.6
P10809_1006
23.9
P10809_1024
21.5
P10809_1043
29.1
P10809_1062
21.1
P10809_1083
19.6
P10809_1097
36.5
Memory CD4 T-cell nTPM: 19.6
Samples: 6
Max nTPM: 29.1
Min nTPM: 12.7
P10809_1014
16.5
P10809_1026
12.7
P10809_1045
14.9
P10809_1064
19.8
P10809_1086
24.6
P10809_1113
29.1
Memory CD8 T-cell nTPM: 20.0
Samples: 5
Max nTPM: 31.4
Min nTPM: 15.4
P10809_1012
16.2
P10809_1027
15.4
P10809_1046
15.4
P10809_1065
21.8
P10809_1111
31.4
Naive CD4 T-cell nTPM: 13.7
Samples: 6
Max nTPM: 19.3
Min nTPM: 8.8
P10809_1015
13.2
P10809_1030
11.3
P10809_1049
11.4
P10809_1068
8.8
P10809_1085
19.3
P10809_1112
18.4
Naive CD8 T-cell nTPM: 18.8
Samples: 6
Max nTPM: 32.5
Min nTPM: 8.5
P10809_1016
8.5
P10809_1031
14.8
P10809_1050
21.1
P10809_1069
17.2
P10809_1087
32.5
P10809_1110
18.4
T-reg nTPM: 13.4
Samples: 6
Max nTPM: 20.0
Min nTPM: 10.1
P10809_1018
10.7
P10809_1037
14.5
P10809_1056
12.5
P10809_1075
10.1
P10809_1094
12.8
P10809_1106
20.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
70.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 42.6
Samples: 4
Max nTPM: 50.7
Min nTPM: 31.4
RHH5202_R3573
44.1
RHH5230_R3602
50.7
RHH5259_R3631
31.4
RHH5288_R3660
44.2
Effector memory CD8 T-cell nTPM: 63.8
Samples: 4
Max nTPM: 75.5
Min nTPM: 51.9
RHH5203_R3574
51.9
RHH5231_R3603
64.0
RHH5260_R3632
63.9
RHH5289_R3661
75.5
MAIT T-cell nTPM: 70.4
Samples: 4
Max nTPM: 77.5
Min nTPM: 67.1
RHH5233_R3605
77.5
RHH5205_R3576
67.1
RHH5262_R3634
68.3
RHH5297_R3663
68.8
Memory CD4 T-cell TFH nTPM: 46.6
Samples: 4
Max nTPM: 53.2
Min nTPM: 40.8
RHH5300_R3666
40.8
RHH5236_R3608
49.3
RHH5265_R3637
43.1
RHH5208_R3579
53.2
Memory CD4 T-cell Th1 nTPM: 43.6
Samples: 4
Max nTPM: 45.8
Min nTPM: 39.0
RHH5210_R3581
39.0
RHH5302_R3668
45.8
RHH5238_R3610
44.0
RHH5267_R3639
45.5
Memory CD4 T-cell Th1/Th17 nTPM: 52.3
Samples: 4
Max nTPM: 61.4
Min nTPM: 43.1
RHH5303_R3669
61.4
RHH5211_R3582
54.6
RHH5239_R3611
43.1
RHH5268_R3640
50.2
Memory CD4 T-cell Th17 nTPM: 56.0
Samples: 4
Max nTPM: 64.4
Min nTPM: 44.7
RHH5304_R3670
59.8
RHH5212_R3583
64.4
RHH5240_R3612
55.1
RHH5269_R3641
44.7
Memory CD4 T-cell Th2 nTPM: 57.4
Samples: 4
Max nTPM: 65.1
Min nTPM: 48.5
RHH5305_R3671
48.5
RHH5213_R3584
59.2
RHH5241_R3613
65.1
RHH5270_R3642
56.7
Naive CD4 T-cell nTPM: 41.2
Samples: 4
Max nTPM: 45.6
Min nTPM: 34.7
RHH5306_R3672
44.7
RHH5214_R3585
39.9
RHH5242_R3614
45.6
RHH5271_R3643
34.7
Naive CD8 T-cell nTPM: 34.4
Samples: 4
Max nTPM: 42.6
Min nTPM: 29.2
RHH5201_R3572
42.6
RHH5229_R3601
29.2
RHH5258_R3630
31.5
RHH5287_R3659
34.1
Non-Vd2 gdTCR nTPM: 65.8
Samples: 4
Max nTPM: 80.5
Min nTPM: 52.2
RHH5235_R3607
52.2
RHH5264_R3636
80.5
RHH5207_R3578
75.5
RHH5299_R3665
54.8
T-reg nTPM: 39.7
Samples: 4
Max nTPM: 51.4
Min nTPM: 28.8
RHH5301_R3667
36.7
RHH5237_R3609
51.4
RHH5266_R3638
28.8
RHH5209_R3580
41.7
Terminal effector memory CD4 T-cell nTPM: 60.4
Samples: 2
Max nTPM: 63.1
Min nTPM: 57.7
RHH5243_R3615
57.7
RHH5272_R3644
63.1
Terminal effector memory CD8 T-cell nTPM: 64.6
Samples: 4
Max nTPM: 68.3
Min nTPM: 58.7
RHH5232_R3604
68.3
RHH5204_R3575
58.7
RHH5261_R3633
68.3
RHH5296_R3662
63.1
Vd2 gdTCR nTPM: 62.3
Samples: 4
Max nTPM: 78.3
Min nTPM: 53.5
RHH5234_R3606
54.1
RHH5206_R3577
78.3
RHH5263_R3635
63.1
RHH5298_R3664
53.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
