MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.1 nTPM
HPA Brain:123.6 nTPM
GTEx:29.1 nTPM
FANTOM5:94.0 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:35.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.0
2019 Male, age 18, unknown 129.1
2411 Female, age 72, unknown 118.5
1827 Male, age 72, unknown 114.6
2666 Male, age 74, left hemisphere 111.7
2219 Male, age 76, both hemispheres 106.4
1830 Male, age 51, unknown 104.0
1833 Male, age 53, unknown 104.0
2586 Male, age 75, left hemisphere 97.7
2828 Female, age 72, unknown 97.1
1870 Female, age 42, unknown 86.6
Dorsal raphe nucleus
nTPM: 98.4
2750 Male, age 76, both hemispheres 119.8
2298 Female, age 72, unknown 98.8
1828 Male, age 53, unknown 92.5
2047 Male, age 72, unknown 91.4
2016 Female, age 72, unknown 89.5
Inferior colliculus
nTPM: 100.2
2097 Female, age 72, unknown 103.8
1890 Male, age 53, unknown 102.1
2849 Male, age 72, unknown 100.7
1848 Female, age 42, unknown 94.4
Median raphe nucleus
nTPM: 112.3
2220 Male, age 76, midline 112.3
Periaquaductal grey, anterior
nTPM: 103.6
1795 Male, age 51, unknown 110.1
2502 Female, age 75, unknown 100.6
1947 Male, age 18, unknown 100.0
Periaquaductal grey, dorsal
nTPM: 94.8
2464 Female, age 72, unknown 107.2
1840 Male, age 53, unknown 97.7
1831 Male, age 72, unknown 89.7
2850 Male, age 76, both hemispheres 84.7
Periaquaductal grey, lateral
nTPM: 94.4
2140 Male, age 76, both hemispheres 96.4
2272 Male, age 74, both hemispheres 94.1
2053 Male, age 18, unknown 92.7
Pretectal area
nTPM: 123.6
2007 Male, age 72, unknown 151.9
1944 Female, age 72, unknown 150.4
1816 Male, age 51, unknown 150.3
1815 Male, age 53, unknown 138.9
1817 Female, age 42, unknown 138.0
2667 Female, age 75, unknown 113.8
2407 Male, age 75, both hemispheres 111.1
2316 Male, age 76, right hemisphere 109.3
2224 Female, age 72, unknown 103.8
2825 Male, age 18, unknown 99.0
2273 Male, age 74, both hemispheres 93.6
Red nucleus
nTPM: 101.8
2785 Male, age 18, unknown 131.3
2823 Male, age 76, right hemisphere 116.7
2588 Male, age 74, left hemisphere 113.8
2584 Male, age 75, left hemisphere 110.4
2503 Female, age 72, unknown 103.0
2725 Female, age 75, unknown 103.0
1904 Male, age 53, unknown 99.1
2227 Male, age 72, unknown 92.4
2769 Male, age 72, unknown 90.5
1865 Male, age 51, unknown 90.4
1821 Female, age 72, unknown 87.3
1954 Female, age 42, unknown 83.6
Substantia nigra
nTPM: 109.5
2409 Female, age 72, unknown 132.6
1889 Female, age 72, unknown 127.7
2583 Male, age 75, right hemisphere 118.7
2241 Male, age 72, unknown 111.4
1941 Male, age 53, unknown 108.4
2590 Female, age 75, unknown 105.1
1851 Male, age 51, unknown 103.2
2665 Male, age 74, both hemispheres 101.4
1916 Female, age 42, unknown 99.6
2699 Male, age 18, unknown 87.1
Superior colliculus
nTPM: 112.7
2087 Female, age 72, unknown 141.3
2668 Female, age 75, unknown 124.8
1913 Female, age 42, unknown 122.2
1796 Male, age 53, unknown 115.2
2261 Male, age 18, unknown 114.7
1995 Male, age 72, unknown 110.9
1895 Male, age 76, right hemisphere 109.9
1839 Male, age 51, unknown 97.4
2587 Male, age 74, left hemisphere 95.9
2664 Male, age 75, both hemispheres 94.4
Ventral tegmental area
nTPM: 103.3
2218 Male, age 76, both hemispheres 115.0
2410 Female, age 72, unknown 110.4
1942 Male, age 51, unknown 108.3
2223 Female, age 72, unknown 102.3
1915 Female, age 42, unknown 92.0
2021 Male, age 53, unknown 91.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.1
Samples: 139

Max nTPM: 55.3
Min nTPM: 14.0
Std nTPM: 7.0
Median nTPM: 28.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 55.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 52.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 49.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 49.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 41.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 40.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 38.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 38.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 37.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.0
FF:10158-103A5 76 years, female 94.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 42.4
Min nTPM: 37.3
Sample A Female 38.3
Sample B Female 37.3
Sample C Male 41.7
Sample D Male 42.4
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 54.4
Min nTPM: 37.5
Sample A Female 37.5
Sample B Female 38.4
Sample C Male 54.4
Sample D Male 40.0
Periaqueductal gray
nTPM: 33.4
Samples: 3

Max nTPM: 36.8
Min nTPM: 29.1
Sample B Female 36.8
Sample C Male 34.4
Sample D Male 29.1
Superior colliculi
nTPM: 39.6
Samples: 4

Max nTPM: 45.2
Min nTPM: 34.5
Sample A Female 38.6
Sample B Female 34.5
Sample C Male 45.2
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.4
Sample A Male 35.5
Sample B Male 31.4
Sample C Female 36.8
Sample D Female 36.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
76003447 Antisense, RP_060608_02_D09, Mouse strain C57BL/6J (56 days, male) 0.2

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