MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.3 nTPM
HPA Brain:17.4 nTPM
GTEx:5.3 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:8.3 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.0
2586 Male, age 75, left hemisphere 22.6
2019 Male, age 18, unknown 19.6
2828 Female, age 72, unknown 15.8
1827 Male, age 72, unknown 15.5
2666 Male, age 74, left hemisphere 15.1
1833 Male, age 53, unknown 14.7
1830 Male, age 51, unknown 14.6
1870 Female, age 42, unknown 14.4
2219 Male, age 76, both hemispheres 14.4
2411 Female, age 72, unknown 13.4
Dorsal raphe nucleus
nTPM: 13.0
1828 Male, age 53, unknown 14.9
2016 Female, age 72, unknown 13.4
2750 Male, age 76, both hemispheres 12.9
2047 Male, age 72, unknown 12.4
2298 Female, age 72, unknown 11.6
Inferior colliculus
nTPM: 15.5
1890 Male, age 53, unknown 17.0
2849 Male, age 72, unknown 15.2
1848 Female, age 42, unknown 14.9
2097 Female, age 72, unknown 14.7
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 15.0
2502 Female, age 75, unknown 15.7
1947 Male, age 18, unknown 14.8
1795 Male, age 51, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 14.2
2850 Male, age 76, both hemispheres 15.8
1831 Male, age 72, unknown 15.1
2464 Female, age 72, unknown 13.1
1840 Male, age 53, unknown 12.7
Periaquaductal grey, lateral
nTPM: 14.0
2140 Male, age 76, both hemispheres 14.6
2272 Male, age 74, both hemispheres 14.2
2053 Male, age 18, unknown 13.1
Pretectal area
nTPM: 15.9
1817 Female, age 42, unknown 19.2
2007 Male, age 72, unknown 18.5
1816 Male, age 51, unknown 18.1
1815 Male, age 53, unknown 17.6
1944 Female, age 72, unknown 16.7
2407 Male, age 75, both hemispheres 16.6
2667 Female, age 75, unknown 15.4
2316 Male, age 76, right hemisphere 14.2
2273 Male, age 74, both hemispheres 13.2
2825 Male, age 18, unknown 13.2
2224 Female, age 72, unknown 12.3
Red nucleus
nTPM: 17.4
2785 Male, age 18, unknown 18.8
1865 Male, age 51, unknown 18.1
2584 Male, age 75, left hemisphere 17.7
2588 Male, age 74, left hemisphere 17.7
2769 Male, age 72, unknown 17.6
2823 Male, age 76, right hemisphere 17.6
1954 Female, age 42, unknown 17.5
2227 Male, age 72, unknown 17.5
1904 Male, age 53, unknown 17.0
1821 Female, age 72, unknown 16.9
2725 Female, age 75, unknown 16.3
2503 Female, age 72, unknown 15.8
Substantia nigra
nTPM: 13.9
2583 Male, age 75, right hemisphere 16.0
2665 Male, age 74, both hemispheres 15.9
1889 Female, age 72, unknown 15.7
2590 Female, age 75, unknown 15.0
2409 Female, age 72, unknown 13.6
1916 Female, age 42, unknown 13.5
1941 Male, age 53, unknown 13.4
1851 Male, age 51, unknown 13.3
2699 Male, age 18, unknown 12.4
2241 Male, age 72, unknown 10.7
Superior colliculus
nTPM: 15.7
2664 Male, age 75, both hemispheres 17.4
1995 Male, age 72, unknown 17.0
2261 Male, age 18, unknown 16.7
1913 Female, age 42, unknown 16.2
2087 Female, age 72, unknown 16.2
2668 Female, age 75, unknown 15.0
1839 Male, age 51, unknown 14.9
1796 Male, age 53, unknown 14.8
1895 Male, age 76, right hemisphere 14.7
2587 Male, age 74, left hemisphere 13.8
Ventral tegmental area
nTPM: 13.1
2218 Male, age 76, both hemispheres 14.0
2410 Female, age 72, unknown 13.7
1942 Male, age 51, unknown 13.3
2223 Female, age 72, unknown 13.1
2021 Male, age 53, unknown 12.4
1915 Female, age 42, unknown 12.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.3
Samples: 139

Max nTPM: 8.5
Min nTPM: 2.5
Std nTPM: 1.0
Median nTPM: 5.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 8.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 7.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 7.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 7.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 7.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 7.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 7.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 6.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 6.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 14.4
Min nTPM: 10.6
Sample A Female 12.5
Sample B Female 10.6
Sample C Male 13.9
Sample D Male 14.4
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 18.0
Min nTPM: 11.6
Sample A Female 15.7
Sample B Female 11.6
Sample C Male 18.0
Sample D Male 15.1
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 13.4
Min nTPM: 10.7
Sample B Female 11.7
Sample C Male 13.4
Sample D Male 10.7
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.8
Sample A Female 15.6
Sample B Female 13.8
Sample C Male 16.7
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 8.9
Sample C Female 7.8
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69261417 Antisense, RP_050118_03_D09, Mouse strain C57BL/6J (56 days, male) 1.1

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