MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.6 nTPM
HPA Brain:126.1 nTPM
GTEx:91.6 nTPM
FANTOM5:125.6 Scaled Tags Per Million
Pig:86.4 nTPM
Mouse:5.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.0
2411 Female, age 72, unknown 104.1
2666 Male, age 74, left hemisphere 103.7
2828 Female, age 72, unknown 101.5
1827 Male, age 72, unknown 100.8
1833 Male, age 53, unknown 98.1
1870 Female, age 42, unknown 98.1
2219 Male, age 76, both hemispheres 97.4
2586 Male, age 75, left hemisphere 96.9
2019 Male, age 18, unknown 96.7
1830 Male, age 51, unknown 92.8
Dorsal raphe nucleus
nTPM: 112.9
2750 Male, age 76, both hemispheres 121.4
2298 Female, age 72, unknown 119.3
2047 Male, age 72, unknown 119.2
1828 Male, age 53, unknown 108.6
2016 Female, age 72, unknown 96.0
Inferior colliculus
nTPM: 84.3
1848 Female, age 42, unknown 87.9
2849 Male, age 72, unknown 85.5
2097 Female, age 72, unknown 84.8
1890 Male, age 53, unknown 79.2
Median raphe nucleus
nTPM: 126.1
2220 Male, age 76, midline 126.1
Periaquaductal grey, anterior
nTPM: 103.3
1947 Male, age 18, unknown 106.8
1795 Male, age 51, unknown 105.4
2502 Female, age 75, unknown 97.8
Periaquaductal grey, dorsal
nTPM: 91.0
2850 Male, age 76, both hemispheres 100.3
1840 Male, age 53, unknown 95.2
1831 Male, age 72, unknown 92.2
2464 Female, age 72, unknown 76.1
Periaquaductal grey, lateral
nTPM: 93.5
2053 Male, age 18, unknown 96.6
2272 Male, age 74, both hemispheres 93.3
2140 Male, age 76, both hemispheres 90.5
Pretectal area
nTPM: 100.2
1816 Male, age 51, unknown 112.2
1815 Male, age 53, unknown 111.9
1817 Female, age 42, unknown 111.9
2007 Male, age 72, unknown 111.3
2224 Female, age 72, unknown 107.2
1944 Female, age 72, unknown 105.8
2667 Female, age 75, unknown 93.8
2273 Male, age 74, both hemispheres 93.1
2825 Male, age 18, unknown 92.6
2407 Male, age 75, both hemispheres 82.5
2316 Male, age 76, right hemisphere 79.6
Red nucleus
nTPM: 97.2
1821 Female, age 72, unknown 112.1
2725 Female, age 75, unknown 105.7
1865 Male, age 51, unknown 98.9
1904 Male, age 53, unknown 97.7
2227 Male, age 72, unknown 97.4
2769 Male, age 72, unknown 96.3
2584 Male, age 75, left hemisphere 95.4
2785 Male, age 18, unknown 93.8
2588 Male, age 74, left hemisphere 92.7
1954 Female, age 42, unknown 92.2
2823 Male, age 76, right hemisphere 92.0
2503 Female, age 72, unknown 91.8
Substantia nigra
nTPM: 120.2
1916 Female, age 42, unknown 148.4
2409 Female, age 72, unknown 138.1
1851 Male, age 51, unknown 135.6
2699 Male, age 18, unknown 121.2
1941 Male, age 53, unknown 118.8
2665 Male, age 74, both hemispheres 117.8
1889 Female, age 72, unknown 114.2
2241 Male, age 72, unknown 103.8
2590 Female, age 75, unknown 103.0
2583 Male, age 75, right hemisphere 101.2
Superior colliculus
nTPM: 93.8
2668 Female, age 75, unknown 111.3
2587 Male, age 74, left hemisphere 98.8
1796 Male, age 53, unknown 98.0
2261 Male, age 18, unknown 97.7
1913 Female, age 42, unknown 94.8
1839 Male, age 51, unknown 90.9
2087 Female, age 72, unknown 89.0
2664 Male, age 75, both hemispheres 87.7
1995 Male, age 72, unknown 86.4
1895 Male, age 76, right hemisphere 83.6
Ventral tegmental area
nTPM: 115.7
2410 Female, age 72, unknown 131.8
2218 Male, age 76, both hemispheres 130.5
2223 Female, age 72, unknown 117.6
1915 Female, age 42, unknown 117.5
2021 Male, age 53, unknown 102.7
1942 Male, age 51, unknown 94.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.6
Samples: 139

Max nTPM: 143.9
Min nTPM: 55.5
Std nTPM: 16.9
Median nTPM: 90.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 143.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 137.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 136.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 136.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 130.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 128.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 125.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 122.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 122.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 116.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 115.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.6
FF:10158-103A5 76 years, female 125.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 86.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.0
Samples: 4

Max nTPM: 93.0
Min nTPM: 62.1
Sample A Female 93.0
Sample B Female 62.1
Sample C Male 85.0
Sample D Male 72.0
Midbrain
nTPM: 86.4
Samples: 4

Max nTPM: 112.1
Min nTPM: 65.3
Sample A Female 112.1
Sample B Female 70.7
Sample C Male 97.3
Sample D Male 65.3
Periaqueductal gray
nTPM: 61.7
Samples: 3

Max nTPM: 66.7
Min nTPM: 57.8
Sample B Female 57.8
Sample C Male 66.7
Sample D Male 60.5
Superior colliculi
nTPM: 84.9
Samples: 4

Max nTPM: 101.0
Min nTPM: 70.0
Sample A Female 84.6
Sample B Female 70.0
Sample C Male 101.0
Sample D Male 84.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 2.7
Sample A Male 7.5
Sample B Male 2.7
Sample C Female 4.6
Sample D Female 5.8

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