MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA Brain:19.6 nTPM
GTEx:39.1 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:59.5 nTPM
Mouse:137.0 nTPM
Allen mouse:16.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2586 Male, age 75, left hemisphere 20.5
2019 Male, age 18, unknown 20.1
1827 Male, age 72, unknown 18.5
2411 Female, age 72, unknown 15.7
1870 Female, age 42, unknown 15.1
2828 Female, age 72, unknown 14.8
2666 Male, age 74, left hemisphere 14.5
1833 Male, age 53, unknown 13.7
1830 Male, age 51, unknown 12.8
2219 Male, age 76, both hemispheres 10.3
Dorsal raphe nucleus
nTPM: 19.2
2298 Female, age 72, unknown 26.0
2016 Female, age 72, unknown 20.7
2047 Male, age 72, unknown 18.6
1828 Male, age 53, unknown 17.8
2750 Male, age 76, both hemispheres 13.1
Inferior colliculus
nTPM: 17.1
2097 Female, age 72, unknown 21.5
1890 Male, age 53, unknown 18.3
1848 Female, age 42, unknown 16.7
2849 Male, age 72, unknown 12.0
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 16.6
1947 Male, age 18, unknown 17.7
1795 Male, age 51, unknown 16.9
2502 Female, age 75, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 14.5
1840 Male, age 53, unknown 15.8
2464 Female, age 72, unknown 15.5
1831 Male, age 72, unknown 14.7
2850 Male, age 76, both hemispheres 11.9
Periaquaductal grey, lateral
nTPM: 14.7
2272 Male, age 74, both hemispheres 16.0
2053 Male, age 18, unknown 15.6
2140 Male, age 76, both hemispheres 12.5
Pretectal area
nTPM: 17.1
2007 Male, age 72, unknown 20.0
1817 Female, age 42, unknown 19.7
1815 Male, age 53, unknown 19.4
1816 Male, age 51, unknown 19.1
2224 Female, age 72, unknown 18.1
1944 Female, age 72, unknown 16.7
2316 Male, age 76, right hemisphere 16.7
2667 Female, age 75, unknown 16.7
2273 Male, age 74, both hemispheres 16.5
2825 Male, age 18, unknown 14.6
2407 Male, age 75, both hemispheres 11.1
Red nucleus
nTPM: 14.2
1821 Female, age 72, unknown 21.7
1954 Female, age 42, unknown 14.4
2227 Male, age 72, unknown 14.4
2823 Male, age 76, right hemisphere 14.4
2588 Male, age 74, left hemisphere 14.3
2725 Female, age 75, unknown 14.0
1904 Male, age 53, unknown 13.4
1865 Male, age 51, unknown 13.1
2584 Male, age 75, left hemisphere 13.1
2503 Female, age 72, unknown 12.9
2769 Male, age 72, unknown 12.8
2785 Male, age 18, unknown 12.6
Substantia nigra
nTPM: 19.6
2241 Male, age 72, unknown 24.9
1916 Female, age 42, unknown 23.4
1851 Male, age 51, unknown 22.0
1941 Male, age 53, unknown 20.8
1889 Female, age 72, unknown 18.9
2590 Female, age 75, unknown 18.2
2699 Male, age 18, unknown 17.9
2409 Female, age 72, unknown 17.1
2583 Male, age 75, right hemisphere 16.6
2665 Male, age 74, both hemispheres 16.5
Superior colliculus
nTPM: 16.0
2668 Female, age 75, unknown 19.1
1839 Male, age 51, unknown 17.9
1895 Male, age 76, right hemisphere 17.9
2664 Male, age 75, both hemispheres 17.3
2587 Male, age 74, left hemisphere 16.9
1796 Male, age 53, unknown 16.0
2261 Male, age 18, unknown 14.9
2087 Female, age 72, unknown 14.7
1995 Male, age 72, unknown 12.9
1913 Female, age 42, unknown 12.7
Ventral tegmental area
nTPM: 16.4
2410 Female, age 72, unknown 22.5
1915 Female, age 42, unknown 19.9
2218 Male, age 76, both hemispheres 14.3
2223 Female, age 72, unknown 14.2
1942 Male, age 51, unknown 14.1
2021 Male, age 53, unknown 13.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 61.8
Min nTPM: 24.0
Std nTPM: 7.4
Median nTPM: 37.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 61.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 61.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 54.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 53.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 52.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 52.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 51.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 50.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.8
FF:10158-103A5 76 years, female 40.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.4
Samples: 4

Max nTPM: 56.6
Min nTPM: 36.2
Sample A Female 56.6
Sample B Female 45.7
Sample C Male 47.2
Sample D Male 36.2
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 68.0
Min nTPM: 53.3
Sample A Female 53.3
Sample B Female 53.3
Sample C Male 68.0
Sample D Male 63.6
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 63.3
Min nTPM: 53.8
Sample B Female 53.8
Sample C Male 63.3
Sample D Male 54.8
Superior colliculi
nTPM: 58.4
Samples: 4

Max nTPM: 66.0
Min nTPM: 51.6
Sample A Female 66.0
Sample B Female 51.6
Sample C Male 58.9
Sample D Male 57.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.0
Samples: 4

Max nTPM: 141.0
Min nTPM: 132.2
Sample A Male 136.7
Sample B Male 138.2
Sample C Female 132.2
Sample D Female 141.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.2
68910953 Antisense, RP_041208_02_A05, Mouse strain C57BL/6J (56 days, male) 16.2

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