MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.8 nTPM
HPA Brain:44.0 nTPM
GTEx:52.8 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:30.5 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2586 Male, age 75, left hemisphere 57.6
2828 Female, age 72, unknown 43.7
2019 Male, age 18, unknown 38.4
1827 Male, age 72, unknown 37.3
2411 Female, age 72, unknown 37.0
1870 Female, age 42, unknown 35.6
1830 Male, age 51, unknown 33.7
2219 Male, age 76, both hemispheres 33.5
1833 Male, age 53, unknown 30.8
2666 Male, age 74, left hemisphere 25.4
Dorsal raphe nucleus
nTPM: 40.7
2298 Female, age 72, unknown 52.7
2016 Female, age 72, unknown 39.7
2047 Male, age 72, unknown 39.7
2750 Male, age 76, both hemispheres 36.2
1828 Male, age 53, unknown 35.4
Inferior colliculus
nTPM: 29.9
2097 Female, age 72, unknown 33.0
1848 Female, age 42, unknown 31.7
1890 Male, age 53, unknown 31.5
2849 Male, age 72, unknown 23.5
Median raphe nucleus
nTPM: 32.2
2220 Male, age 76, midline 32.2
Periaquaductal grey, anterior
nTPM: 44.0
2502 Female, age 75, unknown 50.1
1795 Male, age 51, unknown 44.1
1947 Male, age 18, unknown 37.8
Periaquaductal grey, dorsal
nTPM: 29.6
2464 Female, age 72, unknown 32.4
1831 Male, age 72, unknown 31.9
1840 Male, age 53, unknown 28.8
2850 Male, age 76, both hemispheres 25.4
Periaquaductal grey, lateral
nTPM: 35.6
2272 Male, age 74, both hemispheres 40.1
2053 Male, age 18, unknown 34.5
2140 Male, age 76, both hemispheres 32.1
Pretectal area
nTPM: 37.2
2273 Male, age 74, both hemispheres 47.1
2007 Male, age 72, unknown 42.8
2224 Female, age 72, unknown 37.6
2316 Male, age 76, right hemisphere 37.5
1944 Female, age 72, unknown 37.2
1816 Male, age 51, unknown 36.9
1817 Female, age 42, unknown 36.7
2825 Male, age 18, unknown 36.5
1815 Male, age 53, unknown 36.1
2667 Female, age 75, unknown 34.1
2407 Male, age 75, both hemispheres 26.8
Red nucleus
nTPM: 37.4
2785 Male, age 18, unknown 40.7
2769 Male, age 72, unknown 40.5
2588 Male, age 74, left hemisphere 39.4
1904 Male, age 53, unknown 39.2
2503 Female, age 72, unknown 39.1
2227 Male, age 72, unknown 38.7
2584 Male, age 75, left hemisphere 36.1
2823 Male, age 76, right hemisphere 36.1
1865 Male, age 51, unknown 35.7
2725 Female, age 75, unknown 35.6
1821 Female, age 72, unknown 33.9
1954 Female, age 42, unknown 33.8
Substantia nigra
nTPM: 34.1
1851 Male, age 51, unknown 40.0
1916 Female, age 42, unknown 39.7
2583 Male, age 75, right hemisphere 36.7
2665 Male, age 74, both hemispheres 35.1
1941 Male, age 53, unknown 33.5
2590 Female, age 75, unknown 33.3
1889 Female, age 72, unknown 32.8
2699 Male, age 18, unknown 32.5
2409 Female, age 72, unknown 30.3
2241 Male, age 72, unknown 26.7
Superior colliculus
nTPM: 37.1
2664 Male, age 75, both hemispheres 51.8
1796 Male, age 53, unknown 41.3
1995 Male, age 72, unknown 41.0
2261 Male, age 18, unknown 39.8
1913 Female, age 42, unknown 38.0
2668 Female, age 75, unknown 36.8
2587 Male, age 74, left hemisphere 31.6
2087 Female, age 72, unknown 31.4
1839 Male, age 51, unknown 31.2
1895 Male, age 76, right hemisphere 28.2
Ventral tegmental area
nTPM: 35.2
1915 Female, age 42, unknown 40.7
2021 Male, age 53, unknown 39.6
1942 Male, age 51, unknown 38.8
2410 Female, age 72, unknown 32.2
2218 Male, age 76, both hemispheres 32.1
2223 Female, age 72, unknown 28.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.8
Samples: 139

Max nTPM: 112.8
Min nTPM: 17.1
Std nTPM: 16.2
Median nTPM: 51.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 94.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 87.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 87.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 86.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 85.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 80.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 76.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 75.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.1
FF:10158-103A5 76 years, female 44.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 18.8
Sample A Female 26.3
Sample B Female 22.8
Sample C Male 18.8
Sample D Male 20.6
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 34.1
Min nTPM: 17.4
Sample A Female 34.1
Sample B Female 20.7
Sample C Male 18.5
Sample D Male 17.4
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 22.5
Min nTPM: 17.7
Sample B Female 19.8
Sample C Male 22.5
Sample D Male 17.7
Superior colliculi
nTPM: 22.8
Samples: 4

Max nTPM: 29.7
Min nTPM: 17.6
Sample A Female 25.7
Sample B Female 29.7
Sample C Male 18.2
Sample D Male 17.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 36.9
Min nTPM: 23.6
Sample A Male 36.9
Sample B Male 27.4
Sample C Female 23.6
Sample D Female 34.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
68744839 Antisense, RP_050208_01_G05, Mouse strain C57BL/6J (56 days, male) 1.3

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