MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:14.7 nTPM
GTEx:5.6 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:9.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.9
2666 Male, age 74, left hemisphere 16.0
2586 Male, age 75, left hemisphere 15.0
2828 Female, age 72, unknown 14.5
1833 Male, age 53, unknown 14.3
2219 Male, age 76, both hemispheres 14.2
1827 Male, age 72, unknown 14.0
2019 Male, age 18, unknown 14.0
2411 Female, age 72, unknown 12.6
1870 Female, age 42, unknown 12.2
1830 Male, age 51, unknown 11.8
Dorsal raphe nucleus
nTPM: 12.3
2298 Female, age 72, unknown 13.4
2047 Male, age 72, unknown 12.9
2750 Male, age 76, both hemispheres 12.7
1828 Male, age 53, unknown 12.3
2016 Female, age 72, unknown 10.1
Inferior colliculus
nTPM: 12.0
1890 Male, age 53, unknown 13.1
2849 Male, age 72, unknown 12.0
2097 Female, age 72, unknown 11.7
1848 Female, age 42, unknown 11.2
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 12.9
1795 Male, age 51, unknown 13.8
1947 Male, age 18, unknown 13.1
2502 Female, age 75, unknown 11.7
Periaquaductal grey, dorsal
nTPM: 12.5
1831 Male, age 72, unknown 14.2
2464 Female, age 72, unknown 12.6
2850 Male, age 76, both hemispheres 11.8
1840 Male, age 53, unknown 11.5
Periaquaductal grey, lateral
nTPM: 10.8
2053 Male, age 18, unknown 11.4
2140 Male, age 76, both hemispheres 10.9
2272 Male, age 74, both hemispheres 10.3
Pretectal area
nTPM: 14.2
1816 Male, age 51, unknown 18.2
1944 Female, age 72, unknown 16.3
2407 Male, age 75, both hemispheres 16.2
1817 Female, age 42, unknown 16.1
2007 Male, age 72, unknown 15.6
1815 Male, age 53, unknown 15.2
2667 Female, age 75, unknown 15.0
2224 Female, age 72, unknown 11.7
2825 Male, age 18, unknown 11.3
2316 Male, age 76, right hemisphere 10.4
2273 Male, age 74, both hemispheres 9.8
Red nucleus
nTPM: 12.4
2584 Male, age 75, left hemisphere 16.2
2588 Male, age 74, left hemisphere 13.8
2785 Male, age 18, unknown 13.5
2725 Female, age 75, unknown 12.6
1904 Male, age 53, unknown 12.3
1865 Male, age 51, unknown 12.0
2823 Male, age 76, right hemisphere 11.8
1954 Female, age 42, unknown 11.7
2227 Male, age 72, unknown 11.4
1821 Female, age 72, unknown 11.2
2769 Male, age 72, unknown 11.2
2503 Female, age 72, unknown 10.5
Substantia nigra
nTPM: 14.7
1916 Female, age 42, unknown 19.0
2583 Male, age 75, right hemisphere 18.0
1851 Male, age 51, unknown 15.1
2665 Male, age 74, both hemispheres 14.6
1889 Female, age 72, unknown 14.0
2241 Male, age 72, unknown 13.6
2699 Male, age 18, unknown 13.5
1941 Male, age 53, unknown 13.4
2409 Female, age 72, unknown 12.9
2590 Female, age 75, unknown 12.9
Superior colliculus
nTPM: 13.4
2664 Male, age 75, both hemispheres 16.8
2261 Male, age 18, unknown 14.9
2668 Female, age 75, unknown 14.8
2087 Female, age 72, unknown 14.5
1796 Male, age 53, unknown 13.5
1913 Female, age 42, unknown 12.6
1995 Male, age 72, unknown 12.3
2587 Male, age 74, left hemisphere 11.9
1839 Male, age 51, unknown 11.7
1895 Male, age 76, right hemisphere 10.8
Ventral tegmental area
nTPM: 13.7
2218 Male, age 76, both hemispheres 16.3
1915 Female, age 42, unknown 14.5
2410 Female, age 72, unknown 13.5
2021 Male, age 53, unknown 12.8
1942 Male, age 51, unknown 12.5
2223 Female, age 72, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 9.2
Min nTPM: 2.4
Std nTPM: 1.4
Median nTPM: 5.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 9.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 8.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 8.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 8.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 8.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 8.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 8.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.4
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.0
Sample A Female 8.0
Sample B Female 6.0
Sample C Male 8.3
Sample D Male 7.4
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 13.5
Min nTPM: 5.8
Sample A Female 6.6
Sample B Female 5.8
Sample C Male 13.5
Sample D Male 8.7
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 7.0
Min nTPM: 5.4
Sample B Female 5.4
Sample C Male 7.0
Sample D Male 5.6
Superior colliculi
nTPM: 9.4
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 8.7
Sample C Male 11.4
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.6
Sample A Male 9.1
Sample B Male 8.6
Sample C Female 10.4
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68637969 Antisense, RP_050126_02_A03, Mouse strain C57BL/6J (56 days, male) 0.6

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