HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:70.4 nTPM
HPA Brain:92.0 nTPM
GTEx:70.4 nTPM
FANTOM5:68.0 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:89.1 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008918Antibody CAB062328
Glial cells LowMedium
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 92.0
Sample id Sample description nTPM
Hippocampus
nTPM: 92.0
1855 Male, age 76, left hemisphere 117.8
2148 Female, age 91, left hemisphere 106.1
1898 Male, age 80, left hemisphere 90.6
2621 Female, age 67, right hemisphere 89.9
2529 Female, age 94, left hemisphere 78.7
1911 Female, age 85, right hemisphere 69.1
Dentate gyrus
nTPM: 83.3
2010 Male, age 76, both hemispheres 108.7
2528 Male, age 74, both hemispheres 93.3
2530 Female, age 94, left hemisphere 84.5
1927 Female, age 91, both hemispheres 83.3
2246 Female, age 85, both hemispheres 67.9
2531 Female, age 67, both hemispheres 62.0
Entorhinal gyrus
nTPM: 60.2
2117 Female, age 91, right hemisphere 84.0
1787 Male, age 76, left hemisphere 63.9
2686 Male, age 75, right hemisphere 60.4
2613 Female, age 94, left hemisphere 51.8
1938 Female, age 85, left hemisphere 51.1
2764 Male, age 80, right hemisphere 49.8
Hippocampus, CA1
nTPM: 84.6
2045 Male, age 76, both hemispheres 111.7
1873 Female, age 85, both hemispheres 85.3
2749 Male, age 80, left hemisphere 85.1
2527 Male, age 74, both hemispheres 73.3
2082 Female, age 91, right hemisphere 67.3
Hippocampus, CA2
nTPM: 78.9
1963 Male, age 80, left hemisphere 92.1
1892 Male, age 76, both hemispheres 90.7
2249 Male, age 74, both hemispheres 77.3
2437 Female, age 94, left hemisphere 74.7
2113 Female, age 91, right hemisphere 72.3
1940 Female, age 85, left hemisphere 66.6
Hippocampus, CA3
nTPM: 75.8
1867 Male, age 76, both hemispheres 107.3
2861 Female, age 67, both hemispheres 91.1
2620 Female, age 94, left hemisphere 65.6
2436 Male, age 74, both hemispheres 65.0
2137 Male, age 80, left hemisphere 63.3
1891 Female, age 85, both hemispheres 62.3
Parahippocampal cortex
nTPM: 58.4
2018 Male, age 76, both hemispheres 87.5
2250 Female, age 67, right hemisphere 74.6
2692 Male, age 74, both hemispheres 62.3
2245 Female, age 91, both hemispheres 58.8
2622 Female, age 67, right hemisphere 55.1
2693 Female, age 94, both hemispheres 51.7
1990 Female, age 91, right hemisphere 49.7
2532 Female, age 72, left hemisphere 48.9
1933 Female, age 85, both hemispheres 48.6
1850 Male, age 80, both hemispheres 46.5
Perirhinal gyrus
nTPM: 48.3
2521 Female, age 94, right hemisphere 59.0
1794 Male, age 80, right hemisphere 47.8
1847 Female, age 91, left hemisphere 47.5
2848 Male, age 76, right hemisphere 44.1
1841 Female, age 85, right hemisphere 43.0
Subiculum
nTPM: 74.4
2729 Female, age 91, right hemisphere 95.1
2042 Male, age 76, both hemispheres 92.3
2619 Male, age 74, both hemispheres 74.1
2438 Female, age 94, left hemisphere 69.9
1901 Male, age 80, both hemispheres 67.2
1977 Female, age 85, both hemispheres 47.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 70.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 70.4
Samples: 197

Max nTPM: 139.8
Min nTPM: 28.2
Std nTPM: 21.8
Median nTPM: 66.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 139.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 137.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 132.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 128.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 124.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 121.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 119.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 116.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 116.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 116.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 113.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.0
FF:10153-102I9 76 years, female 90.4
FF:10169-103B7 60 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Subiculum
nTPM: 15.2
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.0
Sample A Female 18.9
Sample B Female 13.0
Sample C Male 15.3
Sample D Male 13.5
Dorsal hippocampus
nTPM: 24.6
Samples: 4

Max nTPM: 34.7
Min nTPM: 19.7
Sample A Female 34.7
Sample B Female 23.8
Sample C Male 20.1
Sample D Male 19.7
Entorhinal cortex
nTPM: 11.1
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.3
Sample A Female 12.8
Sample B Female 11.0
Sample C Male 11.4
Sample D Male 9.3
Ventral hippocampus
nTPM: 23.5
Samples: 4

Max nTPM: 28.2
Min nTPM: 16.2
Sample A Female 26.9
Sample B Female 16.2
Sample C Male 28.2
Sample D Male 22.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 89.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.7
Samples: 4

Max nTPM: 51.6
Min nTPM: 41.1
Sample A Male 48.4
Sample B Male 41.1
Sample C Female 51.6
Sample D Female 41.6
Hippocampal formation
nTPM: 89.1
Samples: 4

Max nTPM: 112.1
Min nTPM: 69.7
Sample A Male 69.7
Sample B Male 83.7
Sample C Female 112.1
Sample D Female 90.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
72472769 Antisense, RP_051101_02_D01, Mouse strain C57BL/6J (56 days, male) 7.2
69568974 Antisense, RP_050426_03_B12, Mouse strain C57BL/6J (56 days, male) 6.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org