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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
148.6
nTPM
Monaco:
288.1
nTPM
Schmiedel:
128.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
148.6
HPA sample
nTPM
gdT-cell nTPM: 46.2
Samples: 6
Max nTPM: 57.7
Min nTPM: 33.2
P10809_1007
33.2
P10809_1022
56.1
P10809_1041
57.7
P10809_1060
48.0
P10809_1077
39.0
P10809_1098
43.4
MAIT T-cell nTPM: 58.1
Samples: 6
Max nTPM: 73.8
Min nTPM: 44.2
P10809_1006
55.7
P10809_1024
73.8
P10809_1043
62.8
P10809_1062
65.6
P10809_1083
44.2
P10809_1097
46.5
Memory CD4 T-cell nTPM: 148.6
Samples: 6
Max nTPM: 209.7
Min nTPM: 94.5
P10809_1014
186.5
P10809_1026
200.0
P10809_1045
102.0
P10809_1064
99.1
P10809_1086
94.5
P10809_1113
209.7
Memory CD8 T-cell nTPM: 53.9
Samples: 5
Max nTPM: 59.4
Min nTPM: 49.8
P10809_1012
53.8
P10809_1027
51.6
P10809_1046
59.4
P10809_1065
49.8
P10809_1111
54.9
Naive CD4 T-cell nTPM: 83.2
Samples: 6
Max nTPM: 110.2
Min nTPM: 66.7
P10809_1015
68.7
P10809_1030
110.2
P10809_1049
85.0
P10809_1068
80.3
P10809_1085
66.7
P10809_1112
88.0
Naive CD8 T-cell nTPM: 49.8
Samples: 6
Max nTPM: 55.5
Min nTPM: 37.6
P10809_1016
47.4
P10809_1031
53.4
P10809_1050
55.5
P10809_1069
52.3
P10809_1087
37.6
P10809_1110
52.5
T-reg nTPM: 57.5
Samples: 6
Max nTPM: 77.9
Min nTPM: 46.6
P10809_1018
61.9
P10809_1037
51.2
P10809_1056
46.6
P10809_1075
48.2
P10809_1094
77.9
P10809_1106
59.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
288.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 85.9
Samples: 4
Max nTPM: 100.6
Min nTPM: 66.0
RHH5202_R3573
66.0
RHH5230_R3602
81.6
RHH5259_R3631
95.2
RHH5288_R3660
100.6
Effector memory CD8 T-cell nTPM: 80.8
Samples: 4
Max nTPM: 96.4
Min nTPM: 56.5
RHH5203_R3574
87.8
RHH5231_R3603
56.5
RHH5260_R3632
82.4
RHH5289_R3661
96.4
MAIT T-cell nTPM: 83.2
Samples: 4
Max nTPM: 108.9
Min nTPM: 63.5
RHH5233_R3605
72.7
RHH5205_R3576
108.9
RHH5262_R3634
87.8
RHH5297_R3663
63.5
Memory CD4 T-cell TFH nTPM: 193.5
Samples: 4
Max nTPM: 328.1
Min nTPM: 133.1
RHH5300_R3666
175.4
RHH5236_R3608
328.1
RHH5265_R3637
137.2
RHH5208_R3579
133.1
Memory CD4 T-cell Th1 nTPM: 96.3
Samples: 4
Max nTPM: 105.8
Min nTPM: 85.0
RHH5210_R3581
102.8
RHH5302_R3668
85.0
RHH5238_R3610
105.8
RHH5267_R3639
91.6
Memory CD4 T-cell Th1/Th17 nTPM: 172.7
Samples: 4
Max nTPM: 186.7
Min nTPM: 157.3
RHH5303_R3669
157.3
RHH5211_R3582
181.1
RHH5239_R3611
186.7
RHH5268_R3640
165.6
Memory CD4 T-cell Th17 nTPM: 288.1
Samples: 4
Max nTPM: 371.8
Min nTPM: 232.3
RHH5304_R3670
232.3
RHH5212_R3583
250.4
RHH5240_R3612
371.8
RHH5269_R3641
298.0
Memory CD4 T-cell Th2 nTPM: 165.5
Samples: 4
Max nTPM: 191.8
Min nTPM: 135.2
RHH5305_R3671
178.9
RHH5213_R3584
135.2
RHH5241_R3613
191.8
RHH5270_R3642
156.1
Naive CD4 T-cell nTPM: 90.7
Samples: 4
Max nTPM: 107.1
Min nTPM: 71.0
RHH5306_R3672
88.3
RHH5214_R3585
71.0
RHH5242_R3614
107.1
RHH5271_R3643
96.4
Naive CD8 T-cell nTPM: 83.0
Samples: 4
Max nTPM: 93.2
Min nTPM: 68.7
RHH5201_R3572
93.2
RHH5229_R3601
88.6
RHH5258_R3630
68.7
RHH5287_R3659
81.6
Non-Vd2 gdTCR nTPM: 80.2
Samples: 4
Max nTPM: 109.1
Min nTPM: 57.3
RHH5235_R3607
109.1
RHH5264_R3636
57.3
RHH5207_R3578
79.4
RHH5299_R3665
74.9
T-reg nTPM: 107.3
Samples: 4
Max nTPM: 139.3
Min nTPM: 93.0
RHH5301_R3667
93.0
RHH5237_R3609
139.3
RHH5266_R3638
96.9
RHH5209_R3580
99.8
Terminal effector memory CD4 T-cell nTPM: 82.2
Samples: 2
Max nTPM: 83.4
Min nTPM: 80.9
RHH5243_R3615
83.4
RHH5272_R3644
80.9
Terminal effector memory CD8 T-cell nTPM: 77.4
Samples: 4
Max nTPM: 79.7
Min nTPM: 72.7
RHH5232_R3604
79.2
RHH5204_R3575
79.7
RHH5261_R3633
77.8
RHH5296_R3662
72.7
Vd2 gdTCR nTPM: 78.0
Samples: 4
Max nTPM: 95.6
Min nTPM: 64.0
RHH5234_R3606
95.6
RHH5206_R3577
64.0
RHH5263_R3635
82.6
RHH5298_R3664
69.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
