MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:412.6 nTPM
HPA Brain:251.3 nTPM
GTEx:412.6 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:191.3 nTPM
Mouse:307.8 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 251.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.6
2586 Male, age 75, left hemisphere 250.7
2411 Female, age 72, unknown 242.4
2019 Male, age 18, unknown 235.1
2219 Male, age 76, both hemispheres 229.4
1870 Female, age 42, unknown 213.9
1827 Male, age 72, unknown 211.1
2828 Female, age 72, unknown 210.2
1833 Male, age 53, unknown 208.0
2666 Male, age 74, left hemisphere 188.3
1830 Male, age 51, unknown 186.6
Dorsal raphe nucleus
nTPM: 227.7
2298 Female, age 72, unknown 262.6
2047 Male, age 72, unknown 233.0
2750 Male, age 76, both hemispheres 226.8
1828 Male, age 53, unknown 220.8
2016 Female, age 72, unknown 195.0
Inferior colliculus
nTPM: 208.5
1890 Male, age 53, unknown 220.0
2097 Female, age 72, unknown 217.0
2849 Male, age 72, unknown 202.9
1848 Female, age 42, unknown 194.0
Median raphe nucleus
nTPM: 250.9
2220 Male, age 76, midline 250.9
Periaquaductal grey, anterior
nTPM: 249.3
2502 Female, age 75, unknown 256.9
1795 Male, age 51, unknown 250.1
1947 Male, age 18, unknown 240.9
Periaquaductal grey, dorsal
nTPM: 199.8
2850 Male, age 76, both hemispheres 217.6
1840 Male, age 53, unknown 213.3
2464 Female, age 72, unknown 188.5
1831 Male, age 72, unknown 180.0
Periaquaductal grey, lateral
nTPM: 216.7
2272 Male, age 74, both hemispheres 255.4
2053 Male, age 18, unknown 204.4
2140 Male, age 76, both hemispheres 190.2
Pretectal area
nTPM: 234.1
2007 Male, age 72, unknown 273.5
1817 Female, age 42, unknown 266.0
1944 Female, age 72, unknown 261.9
1816 Male, age 51, unknown 259.1
2667 Female, age 75, unknown 245.8
2273 Male, age 74, both hemispheres 243.4
1815 Male, age 53, unknown 234.4
2224 Female, age 72, unknown 227.3
2407 Male, age 75, both hemispheres 191.3
2825 Male, age 18, unknown 190.3
2316 Male, age 76, right hemisphere 182.2
Red nucleus
nTPM: 222.4
2503 Female, age 72, unknown 260.7
2785 Male, age 18, unknown 249.1
1865 Male, age 51, unknown 241.6
1821 Female, age 72, unknown 233.4
2769 Male, age 72, unknown 227.6
1904 Male, age 53, unknown 226.9
2227 Male, age 72, unknown 219.5
2725 Female, age 75, unknown 218.8
1954 Female, age 42, unknown 209.2
2588 Male, age 74, left hemisphere 205.1
2823 Male, age 76, right hemisphere 203.9
2584 Male, age 75, left hemisphere 173.1
Substantia nigra
nTPM: 246.5
1916 Female, age 42, unknown 299.6
1851 Male, age 51, unknown 279.2
1889 Female, age 72, unknown 274.8
2409 Female, age 72, unknown 253.6
2699 Male, age 18, unknown 251.5
1941 Male, age 53, unknown 244.7
2241 Male, age 72, unknown 244.2
2665 Male, age 74, both hemispheres 220.8
2590 Female, age 75, unknown 210.7
2583 Male, age 75, right hemisphere 185.8
Superior colliculus
nTPM: 221.6
2587 Male, age 74, left hemisphere 243.9
1796 Male, age 53, unknown 241.4
2087 Female, age 72, unknown 237.7
2668 Female, age 75, unknown 237.0
2261 Male, age 18, unknown 232.6
1913 Female, age 42, unknown 222.8
1995 Male, age 72, unknown 208.0
2664 Male, age 75, both hemispheres 207.1
1839 Male, age 51, unknown 195.0
1895 Male, age 76, right hemisphere 190.7
Ventral tegmental area
nTPM: 251.3
2410 Female, age 72, unknown 287.1
1915 Female, age 42, unknown 263.8
2218 Male, age 76, both hemispheres 262.2
2223 Female, age 72, unknown 251.9
1942 Male, age 51, unknown 234.9
2021 Male, age 53, unknown 208.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 412.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 412.6
Samples: 139

Max nTPM: 1243.1
Min nTPM: 190.2
Std nTPM: 126.8
Median nTPM: 389.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1243.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 925.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 663.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 654.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 646.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 626.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 620.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 610.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 609.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 608.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 597.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.5
FF:10158-103A5 76 years, female 55.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 191.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 159.1
Samples: 4

Max nTPM: 221.5
Min nTPM: 128.1
Sample A Female 221.5
Sample B Female 135.3
Sample C Male 151.3
Sample D Male 128.1
Midbrain
nTPM: 171.4
Samples: 4

Max nTPM: 231.5
Min nTPM: 148.0
Sample A Female 231.5
Sample B Female 152.2
Sample C Male 148.0
Sample D Male 154.0
Periaqueductal gray
nTPM: 127.6
Samples: 3

Max nTPM: 142.0
Min nTPM: 115.3
Sample B Female 125.6
Sample C Male 142.0
Sample D Male 115.3
Superior colliculi
nTPM: 191.3
Samples: 4

Max nTPM: 256.0
Min nTPM: 160.2
Sample A Female 256.0
Sample B Female 180.3
Sample C Male 168.6
Sample D Male 160.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 307.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 307.8
Samples: 4

Max nTPM: 365.3
Min nTPM: 247.9
Sample A Male 365.3
Sample B Male 274.8
Sample C Female 247.9
Sample D Female 343.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
74822929 Antisense, RP_060321_01_A02, Mouse strain C57BL/6J (56 days, male) 7.0

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