HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:69.9 nTPM
HPA Brain:57.0 nTPM
GTEx:69.9 nTPM
FANTOM5:148.4 Scaled Tags Per Million
Pig:87.3 nTPM
Mouse:106.5 nTPM
Allen mouse:11.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040611Antibody CAB025464
Glial cells Not detectedLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.0
Sample id Sample description nTPM
Hippocampus
nTPM: 52.3
1898 Male, age 80, left hemisphere 71.6
1855 Male, age 76, left hemisphere 55.3
2621 Female, age 67, right hemisphere 52.6
2148 Female, age 91, left hemisphere 49.5
1911 Female, age 85, right hemisphere 42.8
2529 Female, age 94, left hemisphere 42.2
Dentate gyrus
nTPM: 51.2
2010 Male, age 76, both hemispheres 57.7
1927 Female, age 91, both hemispheres 54.3
2530 Female, age 94, left hemisphere 53.6
2246 Female, age 85, both hemispheres 49.2
2531 Female, age 67, both hemispheres 46.4
2528 Male, age 74, both hemispheres 46.0
Entorhinal gyrus
nTPM: 51.7
2764 Male, age 80, right hemisphere 61.7
2613 Female, age 94, left hemisphere 55.3
1787 Male, age 76, left hemisphere 53.9
1938 Female, age 85, left hemisphere 51.6
2686 Male, age 75, right hemisphere 46.2
2117 Female, age 91, right hemisphere 41.3
Hippocampus, CA1
nTPM: 52.0
2749 Male, age 80, left hemisphere 69.3
1873 Female, age 85, both hemispheres 53.6
2045 Male, age 76, both hemispheres 51.6
2527 Male, age 74, both hemispheres 45.4
2082 Female, age 91, right hemisphere 39.9
Hippocampus, CA2
nTPM: 54.8
1892 Male, age 76, both hemispheres 77.2
1963 Male, age 80, left hemisphere 61.7
2437 Female, age 94, left hemisphere 58.5
1940 Female, age 85, left hemisphere 47.9
2249 Male, age 74, both hemispheres 44.0
2113 Female, age 91, right hemisphere 39.3
Hippocampus, CA3
nTPM: 55.9
1867 Male, age 76, both hemispheres 69.7
2620 Female, age 94, left hemisphere 69.3
1891 Female, age 85, both hemispheres 52.1
2137 Male, age 80, left hemisphere 49.3
2861 Female, age 67, both hemispheres 48.3
2436 Male, age 74, both hemispheres 46.9
Parahippocampal cortex
nTPM: 50.0
1850 Male, age 80, both hemispheres 56.9
1990 Female, age 91, right hemisphere 54.8
1933 Female, age 85, both hemispheres 53.9
2693 Female, age 94, both hemispheres 53.9
2245 Female, age 91, both hemispheres 52.9
2532 Female, age 72, left hemisphere 51.1
2018 Male, age 76, both hemispheres 46.0
2692 Male, age 74, both hemispheres 45.2
2250 Female, age 67, right hemisphere 45.0
2622 Female, age 67, right hemisphere 40.6
Perirhinal gyrus
nTPM: 57.0
1847 Female, age 91, left hemisphere 66.4
2521 Female, age 94, right hemisphere 62.7
1794 Male, age 80, right hemisphere 58.6
1841 Female, age 85, right hemisphere 51.1
2848 Male, age 76, right hemisphere 46.1
Subiculum
nTPM: 52.2
2438 Female, age 94, left hemisphere 65.3
1901 Male, age 80, both hemispheres 57.7
1977 Female, age 85, both hemispheres 56.9
2619 Male, age 74, both hemispheres 51.7
2042 Male, age 76, both hemispheres 44.6
2729 Female, age 91, right hemisphere 36.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 69.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 69.9
Samples: 197

Max nTPM: 174.2
Min nTPM: 30.4
Std nTPM: 27.2
Median nTPM: 64.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 174.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 171.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 146.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 144.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 141.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 141.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 134.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 132.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 131.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 128.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 123.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 148.4
FF:10153-102I9 76 years, female 149.4
FF:10169-103B7 60 years, female 147.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.3
Pig sample Sample description nTPM
Subiculum
nTPM: 60.6
Samples: 4

Max nTPM: 73.5
Min nTPM: 53.9
Sample A Female 73.5
Sample B Female 56.5
Sample C Male 58.6
Sample D Male 53.9
Dorsal hippocampus
nTPM: 87.3
Samples: 4

Max nTPM: 114.5
Min nTPM: 66.9
Sample A Female 114.5
Sample B Female 93.8
Sample C Male 74.0
Sample D Male 66.9
Entorhinal cortex
nTPM: 63.6
Samples: 4

Max nTPM: 68.7
Min nTPM: 54.7
Sample A Female 68.7
Sample B Female 67.8
Sample C Male 63.3
Sample D Male 54.7
Ventral hippocampus
nTPM: 83.3
Samples: 4

Max nTPM: 97.4
Min nTPM: 54.5
Sample A Female 97.4
Sample B Female 54.5
Sample C Male 90.2
Sample D Male 91.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 106.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 88.3
Samples: 4

Max nTPM: 93.5
Min nTPM: 81.9
Sample A Male 84.5
Sample B Male 93.4
Sample C Female 93.5
Sample D Female 81.9
Hippocampal formation
nTPM: 106.5
Samples: 4

Max nTPM: 112.3
Min nTPM: 99.1
Sample A Male 112.3
Sample B Male 108.3
Sample C Female 106.4
Sample D Female 99.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.3
75774681 Antisense, RP_060530_01_D06, Mouse strain C57BL/6J (56 days, male) 12.2
67978724 Antisense, RP_040923_01_G02, Mouse strain C57BL/6J (56 days, male) 10.3

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